Primulina tabacum: 142526608
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Entry
142526608 CDS
T11246
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
ptab Primulina tabacum
Pathway
ptab03013
Nucleocytoplasmic transport
ptab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
142526608
03015 mRNA surveillance pathway
142526608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142526608
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
142526608
mRNA cycle factors
P-body specific factors
142526608
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
142526608
NCBI-ProteinID:
XP_075487223
LinkDB
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Position
15:complement(29507831..29517164)
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AA seq
505 aa
AA seq
DB search
MTGMLDRTKVVVRHLPPTISQSNFVEQIDSRFSGRYRWISFRPGKSSQKHITYSRASIDF
NKSDDVLEFAEFFNGHVFVNEKGTQYKTIVEYAPSQRVPKNWSKNDGREGTILKDPEYLE
FLDFLAKPTENLPSAEVQLERKEAERVGAPKDIPIVTPLMDYVRQKRAARGGARRTILNG
KPTRRVSGMLSRNTGSGSSRGGSEKRTSTMYVLRDSSKGASSKDKSSSVPVFKQDEQRLL
DKSVTSAAVSRTDSLEGEGDSSEIGKPKILLLKGKEKETSNQNGAPRANNLHSPIPLKQN
HRRESNDRIIRSVLNRDIRQNQTLSGSQSEHRIRNINQDRDKKPPRPTNVQSFQKNANGS
PEGKVASRDSQAFHAEKEERRTRNRDRPDRGVWAPIRRSDGSHASDESLSSSISQTSQVV
DFSEDIKNDVLIMRGGEFRHSGSGRGGHNSVGNGSYRQGGRRGSAYNNKDADGSQVEGKF
PKRGGSSGHVSHEKQVWVQKSSPGS
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgacggggatgctagatcgaacgaaggtggtggtgcggcatttgccgccgactatttct
cagtcgaatttcgtcgagcaaatcgattctcgcttctctgggcgctaccgttggatttct
tttaggccgggcaagtcaagccagaagcatataacatattcaagagcgagcatcgacttt
aataaatcagatgatgtgctagagttcgctgagttttttaatggccatgtttttgtcaat
gagaaagggacccagtataaaacaattgttgagtacgccccttcacagcgtgttccgaag
aattggtcaaagaatgatggccgtgaagggactatattgaaagatcctgaatatttggag
ttccttgattttcttgcgaagcctactgagaatcttcccagtgcggaggtacagctggag
agaaaggaagcagaacgagtaggtgctccaaaggatattcctatagttacccctttaatg
gactatgttcgtcagaaaagagctgctcggggtggagctcggagaaccattttgaatgga
aagccaacgaggagagtcagtggaatgctctccaggaatacaggctcaggatcttcaaga
ggtggctcagaaaaaagaacttctaccatgtacgtgttaagggacagctcaaagggtgca
agcagcaaggacaaatcatcttctgtaccagtttttaaacaggatgagcaacgactcttg
gacaaatctgtcacttcagctgcagtctccagaactgattcattggaaggggaaggtgat
tcctctgaaattgggaagccgaaaatcttacttctgaaagggaaagaaaaggaaacctct
aatcagaatggagctcctcgtgccaacaatttgcacagtccaattcctcttaaacagaat
catcgacgcgaatctaatgataggatcatcaggagtgtccttaacagggatattcggcaa
aatcaaacattatctggatctcaatccgaacaccgaattcgcaatataaatcaggacaga
gacaagaaacctcctcgtcccacaaatgtgcagtcatttcagaagaatgcaaatgggtct
cctgagggtaaggtagccagccgtgattcgcaagcttttcatgctgagaaagaagaaagg
cggacaaggaacagggatagacctgatcgtggtgtttgggctcctattcgacgatcggat
ggatcacatgcaagtgatgagtctttatcatcctctatttcccaaacgtcccaagtagtg
gatttttctgaagatattaaaaatgatgtgttgattatgcgtggtggtgagttcagacat
agtggaagtggtcgtggaggtcataactctgttggcaatggttcttataggcaagggggt
cggcgtggttcggcatataataacaaggatgccgatggctcccaagtggaggggaaattc
ccaaagagaggaggttcttctggccatgtttcccatgagaaacaagtgtgggtccaaaag
tccagtcccggttcatag
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