Primulina tabacum: 142527841
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Entry
142527841 CDS
T11246
Name
(RefSeq) transportin-1-like isoform X1
KO
K18752
transportin-1
Organism
ptab Primulina tabacum
Pathway
ptab03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
142527841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142527841
03009 Ribosome biogenesis [BR:
ptab03009
]
142527841
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
142527841
Ribosome biogenesis [BR:
ptab03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
142527841
Pre-60S particles
142527841
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_EZ
HEAT
IBN_N
TOR1L1_N
HEAT_2
CEP104-like_TOG
Vac14_Fab1_bd
PDS5
TIP120
HEAT_PBS
PSME4_C
Usg
Motif
Other DBs
NCBI-GeneID:
142527841
NCBI-ProteinID:
XP_075488930
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All DBs
Position
15:complement(28575444..28595743)
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AA seq
893 aa
AA seq
DB search
MASSGSEASTWRPQEEGLREICGLMEHQMSPSSGEKSQIFQKLQQYSQFPDFNNYLAFIL
ARMEGKSIEIRQAAGLLLKNNLRSALKTMPPTNQQYLKSELLPCIGAADRQIRSTAGTII
STFVQIGGVAGWPELLHALVKCLDSNDVNHIEGAMDALSKICEDAPHVLDSDIPGLSERP
IDVFLPRFLQLFHSPNITLRKLSLGSVNQYIMLMPTVLYSSMDKYLQGLFVLSNDTAPEV
RKLVCSAFVQLVEVRSAVLEPHLRNVIEYILIVNKDPDDEVALEACEFWSTYCEAELPPE
NLREFLPRLIPVLLSNMAYADDDESLLEAEEDGSLPDRDQDLKPRFHSSRFHGSEDAEED
DDIVNVWNLRKCSAAALDFLSNVFGDDILPTLMPILQTKLTTGSDEAWKDREAAVLALGA
IGEGCINGLYPHLSEIISFLIPLLDDKFPLIRSISCWTISRFSKYIVQRTAHQEGHEQFD
KILIGLLRRILDDNKRVQEAACSAFATLEEEAAGELVSRLDIILRHLMCAFGKYQRRNLR
IVYDAIGTLADAVGGELNQPQYLEILMPPLIAKWQQLSNSDKDLFPLLECFTSIAQALGA
GFSHFAQPVFQRCIDIIQTQRLAKVDPVSSGAQYDKEFIVCSLDLLSGLAEGLGAGIESL
ISQSNLRDMLLQCCVDDAYDIRQSAFALLGDLARVCPVHLHSRVSEFLDVAAKQLNTPKL
KETLSVANNACWAIGELAIKVHKEVSPVVLSVISCLVPILQHPKDLNKSLVENSAITLGR
LAWVCPELVSPHMDHFMQSWCIALSMIRDDIEKEDAFRGLCAIVRANPSGAVHSLVYMCK
AIASWHEIRSEDLHNEVSQVLHGYKQMLKNGAWEQCMSALEPPVKEQLSKYQV
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaagcggcagcgaagcatcgacttggcggccgcaggaagagggactgcgggag
atctgtggacttatggagcatcagatgtctccgtcttccggtgaaaagtcgcagattttc
caaaaactccagcagtactctcagttccctgatttcaacaattacctggcattcatttta
gcgcgcatggaggggaaatcgattgaaattaggcaagcagcagggttgcttctcaaaaat
aaccttagaagcgcattaaagactatgccgcctacaaaccagcaatacctgaagtcagag
ttgttaccttgtattggagcagcagataggcaaatcaggtcgacagctgggactatcatc
agtacttttgttcagattgggggagtagcaggatggcctgaattgctgcatgcacttgtg
aagtgcttagatagtaatgatgtcaatcacatagaaggtgccatggatgctttgtctaag
atttgtgaggatgcgccccatgtgcttgattctgatattcctggattatctgaacgaccc
attgacgtttttcttccaagattcctccagcttttccattcaccgaacattacattgaga
aagctttccttgggttctgtgaatcagtacatcatgctaatgcctacagtcctatattct
tctatggacaaatatttgcaaggtttgtttgttctttctaatgacactgctccagaagtt
aggaagttggtgtgttctgcttttgttcagctagttgaagttcgttcagctgtcttggag
ccacatctaaggaatgtaatcgaatatatattgatagtcaacaaggaccccgatgatgaa
gtggctctagaagcttgtgaattttggtcaacttactgcgaagctgaattgccccctgaa
aacttgagagaatttttaccacgccttattccagttttgctttcaaacatggcttacgct
gatgatgatgaatcacttttggaagctgaggaggatggatctcttccggatcgagatcag
gatctgaaacctcgtttccattcgtcacgttttcatggatcagaggacgcagaagaggat
gatgacattgtgaatgtttggaatttaagaaagtgcagcgcagctgctctggattttctc
tccaatgtttttggagatgatatcttacccacgttgatgcccattctacagacaaagttg
accactggcagtgatgaagcttggaaagacagggaagctgcagttttagctcttggtgct
ataggtgagggttgcattaatggactgtatccccatttgtcagagattatttcatttctg
attccactgcttgatgacaagtttccccttatacggagtatatcttgttggacaatttcc
cgtttcagcaaatatattgtacagcgtactgcccatcaagaaggtcatgaacagtttgac
aaaattcttattgggctgttacggagaatattggatgataacaagcgggtgcaagaggct
gcatgttctgcttttgcgacactcgaagaggaggctgcaggagaattggtatcacgatta
gacatcatactgaggcacttaatgtgtgcctttgggaaatatcagagacgaaaccttaga
attgtatatgatgctattggaacgttagcagatgctgttggaggggaactaaatcagccc
caatatcttgaaatcttgatgcccccattaattgctaagtggcagcagctatcaaattct
gacaaagatctttttccactgttggaatgctttacatcgatagcccaggcactaggagct
ggtttttcgcattttgcacagccagtgtttcagagatgcatcgacatcatccaaactcaa
cgattggctaaggttgatcctgtttcatctggtgcacagtatgataaagagtttattgtt
tgctctttggatcttctctctggcctggctgagggtcttggtgcagggatagagagtttg
atttcacagagtaatttaagagacatgctactgcaatgttgtgtggatgatgcatatgat
attcgccaaagtgcttttgcattgcttggggatcttgctagagtttgtccggttcatttg
cattctcgtgtatctgaatttcttgatgttgctgccaagcaattgaacactcccaagctg
aaggaaaccttgtctgttgccaataatgcatgttgggctattggagaacttgcaataaag
gttcacaaggaggtatctcctgttgttctaagtgtgatctcatgcttggttccaatcctt
caacatcctaaggacctgaacaaatcgctcgtagaaaatagtgccattacacttggaaga
cttgcatgggtttgtccggagcttgtttcaccacacatggatcatttcatgcagtcatgg
tgtattgctttgtccatgattcgtgatgatattgaaaaggaagatgcttttagaggtcta
tgtgcaattgttagagcaaatccatccggggctgtacattcacttgtttacatgtgcaag
gccattgcaagttggcatgaaataaggagcgaggacctgcataatgaagtctcccaggtt
ttacatggctataaacaaatgcttaaaaacggagcatgggaacaatgcatgtctgccttg
gagccacctgtgaaagaacagttatcaaagtatcaagtatag
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