KEGG   Primulina tabacum: 142529168
Entry
142529168         CDS       T11246                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
ptab  Primulina tabacum
Pathway
ptab03030  DNA replication
ptab03410  Base excision repair
ptab03420  Nucleotide excision repair
ptab03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ptab00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    142529168
   03410 Base excision repair
    142529168
   03420 Nucleotide excision repair
    142529168
   03430 Mismatch repair
    142529168
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ptab03032]
    142529168
   03036 Chromosome and associated proteins [BR:ptab03036]
    142529168
   03400 DNA repair and recombination proteins [BR:ptab03400]
    142529168
DNA replication proteins [BR:ptab03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    142529168
  DNA Replication Termination Factors
   ELG1-RFC complex
    142529168
Chromosome and associated proteins [BR:ptab03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    142529168
DNA repair and recombination proteins [BR:ptab03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     142529168
  Check point factors
   HRAD17(Rad24)-RFC complex
    142529168
SSDB
Motif
Pfam: RFC_C DNA_pol3_delta2 RCF1-5-like_lid AAA Rad17 Sigma54_activ_2 ABC_tran AAA_22 RuvB_N Mg_chelatase AAA_5 AAA_23 DUF815 AAA_29 RsgA_GTPase AAA_2 AAA_16 AAA_24 AAA_33 nSTAND3 T2SSE TsaE nSTAND1
Other DBs
NCBI-GeneID: 142529168
NCBI-ProteinID: XP_075490726
LinkDB
Position
16:complement(29434113..29439716)
AA seq 354 aa
MLWVDKYRPKSLDKVIVHEEIAQNLKKLVMEQDCPHLLFYGPSGSGKKTLIMALLRQMFG
PSADKVKVENKNWKVDAGTRSIEVELTTLSSTHHVELNPSDAGFQDRYVVQEIIKEMAKT
RPIDTKGKKGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSR
CLNMRINAPTEGEIVKVLEFIGKKEGLQLPSGFADRIAQQSNRSLRRAILLFETCRVQQY
PFTNNQVIPPMDWEEYVSEIASSIFKEQSPKRLFEVRGKLYELLINCIPPEIILKRLVYE
LLKKLDSELKHEISHWAAYYEHRLRLGQKAIFHLEAFVAKFMSIYKGFLIETFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgttgtgggttgataagtatcgtcccaaatcccttgacaaggttatagtccatgaagaa
atcgcacaaaacctcaagaaattggtgatggagcaagattgtccccatttgctgttctat
ggaccttccgggtccggtaagaagacccttatcatggcccttcttagacaaatgtttggt
cctagcgcggataaggtgaaagtagagaacaagaactggaaagttgatgctggaaccaga
tctatcgaagtagagcttacaactttgtcaagcacacaccatgtggaactcaatcccagt
gatgcaggttttcaagaccgatatgtagttcaagaaataattaaggaaatggccaaaact
cgacctattgacactaaagggaaaaaaggtttcaaagttctagtgctaaatgaggttgac
aaactctcaagagaagcccagcactctcttcgaagaacaatggagaaatatagtgcatct
tgtagactaattctttgctgcaacagttcctccaaggttactgaagctgttcgctctcgt
tgtttgaatatgcgaataaacgctccaacagaaggggagattgtgaaggtgttggaattc
attggcaagaaagaagggctgcaactgccttctggatttgctgatcgcatagcccagcaa
tctaataggagtctgaggagggcaatattgttgtttgaaacttgtcgtgtccaacagtac
cctttcacaaacaatcaagtgatacccccaatggattgggaggaatacgtttctgaaata
gcatcaagcatattcaaggagcagagtcctaaacggttgtttgaggtccgaggaaagctg
tacgaactactcattaattgcattcctccagagattattttaaagaggttggtttatgaa
ctgttgaagaaattggattctgaactaaagcatgagatctctcattgggctgcatattat
gaacacagattacgtcttggccagaaagcaatatttcatcttgaagcttttgtggccaag
tttatgagcatctacaaaggtttcctcatcgagacgtttggttga

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