Primulina tabacum: 142530080
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Entry
142530080 CDS
T11246
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ptab Primulina tabacum
Pathway
ptab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
142530080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptab03021
]
142530080
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142530080
Transcription machinery [BR:
ptab03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
142530080
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
142530080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pfc11_Clp1_ID
zf-C2H2_4
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
142530080
NCBI-ProteinID:
XP_075491959
LinkDB
All DBs
Position
16:complement(33121377..33129774)
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AA seq
869 aa
AA seq
DB search
MENLRRLSDRSISKEPGLKKPRLTEVPTASDRSSNGRRGFIQRPVVSNSSAGGLNFLGDQ
HSESSDSGRGPFPQQLGQQLHHELVTQYKTALAELTFNSKPIITNLTIIAGENSHAAKAI
AATICANILEVPSEQKLPSLYLLDSIVKNIGKDYIKSFATRLPEVFCKAYRQVDPSIRQS
MRHLFGTWKGVFSPQSLHMIEKELGLTSTVNVSSQGTIASRPDSQSQHPTPSIHVNPKYL
EARQQIEITRARGTSIDNNGASMKSTDDVRAPERTSSINNGKTWTGPYAKDTASRLRRSQ
GVHAIEPRVDDQASAEGRILSGPDKNPSHVETLGYGPKISSTPQGQTLGAASSLKPNFMH
QHPPSPSFSASEYKQTSVGPPTDPRKLAGLRNMESNDQNSLDSQHLPYRDVNQANKQRLH
PQTTSAVNLPLQQRKHFPSTRPKNTKVSGFEPSSRENLFLSQVSASENLPTMVTSSSDRS
DPHTVDSPGPGQSIASSLLAAVVQSGILNSSTVTGRSTKTIQESGLESSLGDARPAISSD
PCANFPSRPLPGNTALPAKVIHPPSPSVPPPSSLAGIHPEKPPTAVKAVSDPVSSLLSSL
VAKGLISSSNSDSLSFTSPIISDQALDRGPGVPSTSSTPVSFIPGIIEKPFSSSIIDKPS
PLKSAAEVSDDMPQSTTKIKNLIGFEFRPDVVRKFNPAVVSELSGLPHQCDICGLGLKCQ
EQLDRHMDWHVVRDSEQNSSNITSRRWYTDSNDWVAGIGSFHDSDSATDLLGGQGETTES
GDHMVPADENQCACILCGELFDDFYSQGRDEWMFKGAVYLRKPSSESHEKTGTANDNTCL
GPIVHANCISDQAVRDLGLACHIELENDA
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atggagaatttgcgtagactatctgatagatctatttcaaaagagccggggctgaagaaa
ccaaggctcaccgaggttcctacggcatcagatcgcagctccaatggtcgcagaggattc
attcaacggccggtggtttcaaactccagcgctggcggcttgaattttctgggagaccag
cattccgagagcagcgactcagggcgtggacccttccctcaacagctaggtcagcagctg
catcatgagctggtgactcagtacaagactgctttagctgagttgactttcaactcgaag
ccgattataactaacctaactattattgccggcgagaattcacatgcggccaaagccatt
gcagcaactatatgcgctaatattcttgaggttccgagtgaacagaagctgccatctctg
tatttgttggacagtatcgtgaagaatattgggaaggattatataaagtcctttgctacc
agattacccgaggtgttctgcaaggcctataggcaggttgatccttcaatacgtcaaagc
atgcgccacctttttggcacctggaaaggagtcttctctccgcagtcactccatatgatc
gagaaggagcttggattaactagtactgtcaatgtttcatctcaaggaacaatagcgtct
aggccggactcacaatcccaacaccctacgcccagcattcatgtaaaccccaaatatttg
gaggctaggcagcaaattgagatcaccagggctagaggaactagcattgacaataatgga
gccagtatgaaatcaactgatgatgttagagcaccggagagaacttccagtattaataat
gggaaaacatggaccggaccttatgctaaggacactgctagccgtctccgaaggtctcaa
ggtgtacatgctattgagccaagggttgatgatcaagcttcagctgaagggaggattctt
tctgggcctgataaaaacccctctcatgtcgaaactctgggttatggacccaaaatttct
agtacaccacaaggacagactcttggagctgcatcatccttgaaaccaaacttcatgcac
caacatccaccttcgccatctttctcagccagtgaatacaagcaaacctccgttggacct
cctacagacccaagaaagcttgcaggactgagaaacatggaatctaacgaccaaaattct
ctggattctcaacatttgccatatcgagatgttaatcaggctaataagcagagattgcat
ccccaaaccacatctgctgtgaatcttcctcttcagcagagaaaacattttccctctact
cgaccgaaaaatactaaagtctctggttttgaaccttccagccgtgaaaatctttttctg
tcacaggtttcagcatccgaaaatctccctacaatggtgacttcatcgtcggacagatct
gatccccatactgttgactcccctggtcctggacaatcaatcgccagcagtttgttagct
gctgtagttcaaagtggtatacttaatagtagtactgtcacaggtcgctcgactaagacg
attcaagaatctgggcttgaatcgtctctaggagatgcacgaccagctatttcaagtgac
ccttgtgccaatttcccttcacggcctttgcctggaaatactgcactccctgcgaaggtg
atccatccaccatcaccatctgttcctcctccctcctctttagcaggtattcacccagaa
aagcctccaactgcagttaaagctgtatctgatccagtttctagccttttaagctcattg
gttgcaaaaggcttaatatcctcttcaaattctgattcattatcctttacctcaccaata
atatccgatcaagctttggacagaggtcccggggttcccagcactagttctactccagtt
tctttcattccaggcataattgagaaacctttttcatcatccatcatagataagccatct
ccattaaagtctgctgctgaggtctctgacgatatgcctcagtcaacaacaaagataaaa
aatcttataggctttgaattcagacccgatgtagttcgcaaatttaatccagctgttgtc
agtgaactttctggtctcccgcatcagtgcgatatatgtggacttgggctcaagtgtcaa
gaacaacttgatagacacatggattggcatgttgtaagggattctgagcagaactcttcc
aacataacttcaaggaggtggtatactgactcgaatgactgggtggctggaattggcagc
tttcatgacagcgatagtgccacggacctcctgggaggtcagggcgaaacaacagaaagc
ggtgaccacatggttcctgcagatgaaaatcagtgtgcatgtattttatgtggtgagctg
tttgatgatttctacagtcaaggaagggatgagtggatgttcaaaggagctgtttactta
agaaagccatcctcggagtcacatgaaaagactggaactgctaatgataatacttgtctg
ggtcctatagtccatgctaactgcatatcggatcaggcagttcgtgacctggggctggct
tgtcatatcgaactggaaaatgatgcataa
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