Primulina tabacum: 142530207
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Entry
142530207 CDS
T11246
Name
(RefSeq) autophagy-related protein 18b isoform X1
KO
K17908
autophagy-related protein 18
Organism
ptab Primulina tabacum
Pathway
ptab04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
142530207
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ptab04131
]
142530207
03029 Mitochondrial biogenesis [BR:
ptab03029
]
142530207
Membrane trafficking [BR:
ptab04131
]
Autophagy
Autophagosome formation proteins
Atg18-Atg2 complex
142530207
Mitochondrial biogenesis [BR:
ptab03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
142530207
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROPPIN
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_Vps41
BCAS3_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
EIF3I
Beta-prop_TEP1_2nd
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_IFT80_2nd
Motif
Other DBs
NCBI-GeneID:
142530207
NCBI-ProteinID:
XP_075492121
LinkDB
All DBs
Position
16:27878770..27909315
Genome browser
AA seq
369 aa
AA seq
DB search
MRMATQSSSHPIICASFNQDNSCFAIGTRDGFKIFDCNTGKLLYEKVIGAFVIVEMLYRS
SLLAIVGAGEQPSLSPRRLCLFNTVSGTALRELNFLTSILAVRVSRKRLIVVLQEQAYIY
DVNSLEIKRIIDTVPNLKGLCAFSANSENPYLALPASVTKGSVLVYNVIDLQSHCEIHAH
CSPLAALAFSSNGMYIATASEQGTIIRVHLISEATKSYSFRRGTYPSTIFSLSFGPSADR
PDILLATSSSGSLHIFPLGLDLNDRSKKSSSFLENIMSGSVSDALDPSHHLVFHHAFPAG
VKSQTVIRKTDKANTSMSEPVALRATVSVISFSGYFQEYGLRVNHKNEAAWSLEHELNLL
TAVAEKSST
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atgcgaatggcgactcaatcttcttcccaccctattatctgcgcttcattcaatcaagat
aacagttgctttgcaattggaacgagagatgggttcaaaatttttgactgcaatactgga
aagcttctttatgaaaaagttattggggcatttgttattgttgaaatgctatacagatca
agtcttcttgccattgtcggtgctggtgaacagccatctttatcaccaagaagattatgt
ttgttcaatactgtttctggaactgctctccgagaactaaatttcttgacttccatttta
gctgttcgtgttagcaggaaaagattgattgttgtattgcaagagcaagcatatatttat
gatgtcaacagtctggaaatcaagcgcatcattgatacggtgccaaatttaaaaggactc
tgtgcattttctgcaaattcggaaaatccctacttggctcttcctgctagtgtaacgaaa
ggttctgtgttggtctacaacgttatcgatctgcaatcgcactgtgagatacatgcccat
tgctcaccattagctgccttggctttttcctcaaatgggatgtatatagcaacggcatct
gagcagggaaccataatcagagttcatctgatttcagaagcaactaagtcatacagtttc
cgtagggggacatatccatcaaccatcttttctctttcttttgggccatcagctgatcgc
ccagatattcttcttgcaacaagctcttcgggatctcttcacatcttccctctgggtttg
gatctcaacgacaggagcaaaaaatcgagtagtttccttgaaaatataatgtctggttct
gttagtgatgccttggacccatcgcatcatctggtatttcatcatgcttttccagctgga
gtcaaaagtcaaaccgtgattcgaaagacggacaaagccaatacatcaatgtccgaacca
gtggctttgagggccactgtgtcagttatttctttcagcgggtattttcaagaatatggg
ctgagagtaaaccacaagaatgaagctgcatggagcttggaacacgagctaaatcttttg
acagcagttgcagaaaaatcctccacttaa
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