Primulina tabacum: 142530767
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Entry
142530767 CDS
T11246
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11 isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
ptab Primulina tabacum
Pathway
ptab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142530767
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142530767
Enzymes [BR:
ptab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
142530767
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
142530767
mRNA degradation factors
3'-5' decay
Ski complex
142530767
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
MTR4-like_stalk
Ski2_N
Helicase_C
DEXQc_Suv3
AAA_22
Motif
Other DBs
NCBI-GeneID:
142530767
NCBI-ProteinID:
XP_075492696
LinkDB
All DBs
Position
2:complement(17759819..17814794)
Genome browser
AA seq
1370 aa
AA seq
DB search
MDRVPAADELSFRVGFTGHSGHLRIEPLPPVERQIPLHSIPDFILPPAFPRETPESVKEY
VKEKYLEPRLDDDIFCPENSGKQWEFNWFDRAKIQLEPSLPRSVVVPLWEMPSRRKKHGD
MDGWEPESVEVDISELTAGADNTGSLPRIVGPAKDFVKGSINSRPFHPGGLVDVDSLGKI
LPDGCYNGEWAQELLNGGPAQVLPPGFKEGLNLGHLKLLKEHSCTWNVTENANADKGTST
VKLNELSLQFDDLFKKPWEEDVFEYIGDATIPGGTQIESVKESSQIAIEIRDPTERKTST
EIKDPTKINDLNVADNVIKKPSSLLDEILSSESKELMPRLVGDTNIGGQQPKEAWALSGG
SEEIAERFHELVPDMALTFPFELDSFQKEAIYYLERGDSVFVAAHTSAGKTVVAEYAFAL
ASKHCTRAVYTAPIKTISNQKYRDFCGKFDVGLLTGDVSLRPDADCLIMTTEILRSMLYR
GADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINFVLLSATVPNTFEFADWISR
TKQKQIRVTGTTKRPVPLEHCLFYSGEFFNICENEKIIPQGLKAAKDLYKKKNSATVKSG
AGSGSLPANERARNQKRESSFNAKQAKHSGSQNLVNSGAGWGYQSNGSNSWGFRRSEASL
WLLLINKLAKKFLLPVVIFCFSKNRCDKSADNLTGTDLTTGSEKSEIRIFCDKAFSRLKG
SDRNLPQVVRVQGLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPA
RTVVFDSLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVMCRDDIPEEKDLKHVL
VGSATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHAQKNLPEKQQLLMRKLAQP
TKIIECIKGEPGIEDYYELYSESEKYGNHIAEAVMQSPVSQQHLTSGRVVLVKSQWAQDH
LLGVVIKAPSANYKQYIVLVLTPEIPPGLQTPSSSGAKKEHTDFQILVPKSKRGLGDDYY
SSASSRKGSGVVNLKLPHRGIAAGVSYEVRGVDNNEFLSICSHKIIIDQVGLLEDVSVGA
YSKTVQKLLILKSDGNKYPPALDPVKDLKLKDLDIVEAYYKWNILLQKMAQSKCHGCVKL
DENIKMAREIKRHKEEVNALKFQMSDEALQQMPDFQGRIDVLKETGCIDADLVVQIKGRV
ACEMNSGEELICTEFLFENQLDDLEPEEAVAIMSAFVFQQKNTSEPSLTPKLSEAKMRLY
DTATSLGELQSKFKLQVDPQEYARENLKFGLVEVVYEWAKGTPFADICELTDVPEGMIVR
TILRLDETCREFRNAAAIMGNSALHKKMETASNLIKRDIVFAASLYITGV
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atggatcgggtgcctgccgcagatgagttatccttccgtgtgggattcacggggcatagt
ggccatctcaggattgaacctctcccgccggtggaacgccaaattccacttcattccatt
ccagattttatcctcccaccggcattccctagggaaacacctgaatcggtaaaagagtat
gtaaaggagaaatatttggaaccgaggttggatgacgatattttttgtccggaaaattct
ggaaagcaatgggagtttaactggttcgacagggccaaaattcagttagagccatctctg
ccacgttccgtggttgttccattatgggaaatgccttctaggcgcaaaaaacatggggac
atggatggttgggagccagagtcggtggaggtggatatatcagaactgacagcaggagct
gataacactggttctttgccacgaattgttggacctgctaaggattttgttaagggaagt
ataaatagtcgtccttttcacccaggtggactggttgatgttgattctttggggaaaatt
cttccagacggttgttacaatggtgagtgggcacaagaacttcttaacgggggccctgca
caagtacttcccccaggctttaaagagggactgaatctaggtcatctcaagcttttgaag
gagcattcttgcacatggaatgtcaccgaaaatgcaaatgcggacaagggcacatcaact
gtaaagctgaatgagctgtcattgcagttcgatgacttattcaagaaaccctgggaagag
gatgtctttgaatacattggagacgctactatacctggcggaacgcagatagaatctgtc
aaggaatctagtcaaatagcaatcgagataagagatccaactgagagaaaaacttcaact
gagataaaagatccgaccaagataaatgatttaaatgttgctgataacgtgataaagaaa
ccatcctctcttcttgatgaaatattgtctagcgaatcaaaagaattaatgcctagatta
gtcggagatacaaatatcggtgggcagcaaccaaaagaggcatgggctcttagtggggga
agtgaagaaattgccgaacgatttcacgaactcgttcctgatatggcacttacatttcca
tttgaactcgattctttccaaaaggaggccatatattatcttgaacggggggattctgtt
tttgtagctgctcatacatcagctggcaagacagttgttgccgaatacgcatttgctctg
gcttcaaaacattgcacaagagctgtatatacggctccaattaaaacgattagcaatcag
aagtacagagatttttgtggaaaatttgatgttggtctacttaccggtgacgttagcttg
aggccagatgctgattgtctcattatgaccactgagatattgagatcaatgctctatagg
ggtgctgatataatacgtgacatagaatgggttatattcgatgaagtgcattatgttaac
gacattgaaagaggggtggtttgggaggaagttattatcatgcttccgaggcatatcaat
ttcgtactgctctcagccactgtgcctaacacatttgagtttgctgattggattagtcga
acgaagcaaaagcaaattcgtgttactgggaccactaaaagaccagtccctctggagcac
tgtcttttctattctggagagttttttaatatttgtgaaaatgagaagatcatccctcag
gggttaaaagctgccaaggatctgtacaaaaagaaaaattccgccacagttaaaagtggt
gcagggtctgggtctttacctgccaatgaaagggccaggaatcagaaacgtgaaagttct
tttaatgcgaaacaggccaaacattctggatctcagaatttggtgaactctggggctgga
tggggttatcaaagcaatggtagcaacagttggggatttaggagatcagaagcttcctta
tggttgctgcttattaataagctagcaaaaaaattcctcttgcctgtggttatattctgc
ttttcaaaaaaccgatgcgataaatcagcggataacttgactgggacggacctcacgact
ggctcagagaaaagtgaaattcggatcttttgtgacaaggcattctcaaggctcaaagga
tcggatagaaatctaccgcaggttgtcagagttcaaggccttcttcgaagaggaatcggt
gtacaccatgctggacttctcccaattgtgaaagaagtagttgaaatgctattctgtcgt
ggtgttatcaaggttttgttttcaacagagacatttgcaatgggagtcaatgcccctgca
aggacggttgtttttgattctttaaggaaattcgatggcagggaatttcgacaattactt
cccggagaatatactcagatggctggtcgggctggtaggagaggacttgataaaattggt
acagtagttgtgatgtgtcgtgatgatattcctgaagagaaggatttgaaacatgtttta
gttgggagcgcaactaggcttgaatctcagtttcgattgacatatatcatgatcttgcat
ctgctacgtgttgaagagttgaaggtggaagacatgctgaaaagaagttttgctgaattt
catgctcagaagaatcttccagagaaacagcaacttctgatgcgaaagcttgctcaacca
acaaaaataatagaatgtattaaaggtgaacctgggatagaggattattatgagttgtat
tcggagagtgagaagtatggcaatcatatagcagaggcagtcatgcagtcaccagtttct
caacagcatttaacttcgggaagggtggtattggtgaaatcacaatgggcccaagatcat
ttactaggtgttgtcatcaaagcaccttcagccaattataaacaatacatagtcttagtg
ttgacgcctgaaatacctccgggattgcaaactccatcaagcagtggagcaaagaaagaa
cacacagatttccaaatattagtgccaaaatcaaaaaggggtttgggagatgattattac
tcttcagcatcatctcgtaaaggatctggtgttgtcaatttgaaactacctcaccgtggt
atcgctgctggggtgagttatgaggttagaggagttgacaataatgagtttttatccata
tgcagtcacaaaataattatcgaccaagttgggcttctggaagatgtgagtgttggtgcc
tattctaaaacggtacagaagcttttgattttgaaatcagatggaaataaatacccacca
gctttagatccagtgaaagatctgaagttgaaagaccttgatattgtcgaggcttactac
aaatggaatatcctgttgcagaagatggcgcaaagtaagtgtcatggttgtgtcaaactg
gatgagaacattaagatggctcgagaaattaagcgacacaaagaggaagtgaatgctctt
aagtttcaaatgtcagatgaagctcttcaacagatgcctgattttcagggccgaattgat
gttttgaaggaaactggatgcatagacgccgatcttgttgtgcaaattaaaggtcgtgtt
gcttgtgaaatgaattctggggaggagttgatatgtacagagttcttgtttgagaatcaa
ctggatgacctggaaccagaagaagctgtggctataatgtcggctttcgtattccagcaa
aagaacacatctgaacctagtcttacgccaaagctctctgaagctaaaatgagactgtat
gacacagcaacaagccttggggagcttcaatcaaaattcaaactacaggttgatccccag
gaatatgcccgagagaatctcaagtttggtctagtcgaagttgtgtatgagtgggcaaag
ggaactccatttgctgatatttgtgaactcactgatgttcctgaaggcatgatagttagg
acgatacttagattggatgaaacatgccgtgaattcagaaatgctgcagcaattatgggt
aattctgcacttcacaagaaaatggaaaccgcttccaacttaattaagagggacatcgtc
tttgctgctagcttgtacattactggtgtttag
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