KEGG   Primulina tabacum: 142530853
Entry
142530853         CDS       T11246                                 
Name
(RefSeq) protein transport protein SEC13 homolog B-like
  KO
K14004  protein transport protein SEC13
Organism
ptab  Primulina tabacum
Pathway
ptab03013  Nucleocytoplasmic transport
ptab04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:ptab00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    142530853
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    142530853
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ptab03019]
    142530853
   04131 Membrane trafficking [BR:ptab04131]
    142530853
Messenger RNA biogenesis [BR:ptab03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     142530853
Membrane trafficking [BR:ptab04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    142530853
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    142530853
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    142530853
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_TEP1_2nd ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_Vps41 WD40_MABP1-WDR62_2nd WDR55 Beta-prop_IFT122_1st Beta-prop_EIPR1 EIF3I Beta-prop_WDR19_1st Beta-prop_TEP1_C Beta-prop_IFT140_1st Beta-prop_WDR90_POC16_2nd Beta-prop_HPS5 NBCH_WD40 Beta-prop_SCAP Beta-prop_WDR75_1st WDR90_beta-prop_4th
Other DBs
NCBI-GeneID: 142530853
NCBI-ProteinID: XP_075492840
LinkDB
Position
17:15806281..15807422
AA seq 301 aa
MPGQKIETGHQDVVHDVAMDYYGKRLATGSSDNTIKIIGVTNSGSQHLATLTGHQGPVWQ
VAWAHPKFGSLLASCSYDGKVVIWREGNQNEWIQAHVFDDHKASVNSISWAPHELGLCLA
CGSSDGNISVYMAGPDGGWDKSRIDQAHPVGVTSVSWAPSTAPGALVGTSLLDPVQKLAS
GGCDNTVKVWKFDNGTWRLDCFPALSMHSDWVRDVSWAPNLGLPKSTIASASQDGKVILW
TSLKEGDQWNGKVLKDFKTPVWRVSWSLTGNILAVADGQNTVTLWKEAVDGEWQQVTTVD
S
NT seq 906 nt   +upstreamnt  +downstreamnt
atgcctggacaaaagattgagactggccaccaagatgttgttcatgatgtggcaatggat
tactatggtaaacgtctcgctacgggctcgtctgacaatacgatcaagatcattggagtt
acgaactcgggatctcagcatcttgctactttaactggtcaccaagggcctgtttggcaa
gtagcatgggcgcatccgaaatttgggtcgcttcttgcttcttgttcatatgatggaaag
gttgtcatttggagggaaggaaatcaaaacgagtggatacaggctcatgttttcgatgat
cacaaagcatctgtcaattcgatatcttgggcacctcatgaacttggcctatgtctcgca
tgtggatcttcggatggtaatatatcagtttacatggcaggtccagatggtggatgggac
aaatcccgtatagaccaggctcatccagttggtgttacatctgtttcatgggccccatca
accgcccctggtgctctagtaggcactagcctactcgatcctgttcagaagctagcatcc
ggtggctgtgataatacggtgaaagtgtggaagtttgacaatggaacttggagattggac
tgcttcccagctctgagcatgcatagcgattgggtgcgggatgtttcttgggcaccaaac
ctaggacttcccaagtcgacaattgcaagtgcttctcaagatggaaaggtaatactatgg
acttctctgaaggaaggtgatcaatggaatggcaaagttttgaaggatttcaagactcct
gtttggagggtctcgtggtcgcttaccggaaacatacttgctgtggctgatgggcaaaac
actgtgacactctggaaagaagcagtggacggagagtggcagcaggtgactacagtcgac
tcatga

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