Primulina tabacum: 142532607
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Entry
142532607 CDS
T11246
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ptab Primulina tabacum
Pathway
ptab03013
Nucleocytoplasmic transport
ptab03015
mRNA surveillance pathway
ptab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142532607
09122 Translation
03013 Nucleocytoplasmic transport
142532607
03015 mRNA surveillance pathway
142532607
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142532607
03041 Spliceosome [BR:
ptab03041
]
142532607
Enzymes [BR:
ptab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
142532607
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
142532607
Spliceosome [BR:
ptab03041
]
Complex C
Other components
EJC/TREX
142532607
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
142532607
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
142532607
NCBI-ProteinID:
XP_075495036
LinkDB
All DBs
Position
18:27949983..27955111
Genome browser
AA seq
461 aa
AA seq
DB search
MGENKENDAYEEELLDYEEEDEKAADSVTAKVNGESAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPIAGQVAALV
LCHTRELAYQICHEVERFSTYLPDIKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILA
LARDKELSLRNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYSELFVSFSSNYANKALFFFGFGIYWGYIHIFYTRDL
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgggagagaataaggagaacgacgcttacgaagaggagcttctcgactacgaggaggaa
gacgaaaaggcagcagactccgtcaccgccaaagtcaacggcgagtccgccaagaagggt
tacgtaggcattcacagttcaggattcagagatttcctcttgaagccagagcttttacgg
gctattgtggattctggatttgagcatccgtcagaagtgcaacacgaatgcatacctcaa
gctattttgggaatggatgttatttgccaagcaaaatccggtatggggaaaactgctgtg
tttgttctctcaacgttgcagcagatcgaacctattgcaggtcaagttgctgctctcgtt
ctgtgtcatacaagggaattggcttaccagatctgtcatgaggttgagcggttcagcaca
tatttaccggatatcaaagttgccgtcttttatggtggtgtcaacattaaagtccacaag
gatctcttgaagaatgaatgccctcacattgtcgtgggaacacctggaaggatacttgct
ctggcaagagataaggaactttctttgaggaatgtgaggcatttcattctggatgaatgt
gataagatgctcgagtcccttgatatgaggagagatgtccaggagatctttaagatgaca
cctcatgataaacaagttatgatgttctcggccacactcagcaaagagattcgaccagtt
tgcaagaaattcatgcaagatccaatggaaatctatgtggacgatgaggccaagttgacc
ctccatggtcttgtgcagcactacatcaaattaagtgagctggagaaaaaccggaagctg
aatgatctactcgatgcattggacttcaatcaagttgtcatttttgtcaaaagcgtcaat
agagctgccgagcttaacaagttgcttgtggagtgtaatttcccatctatttgcattcat
tctggcatgtctcaggaagaaagattgactcggtacaagggattcaaagaagggcacaag
agaattctagttgcaacagatctggtgggaagaggaatagacattgaacgggtgaacatt
gtgattaactatgatatgcctgattcagctgacacttatctccatcgggtgggtagagct
gggcgatttggaaccaaaggacttgccatcacgtttgtttcttctgcatctgattcagat
gttcttaatcaggttcaggagagatttgaagttgacatcaaagagcttccagagcagatt
gatacatctacatacagtgagttgtttgtttctttttctagcaattacgcaaataaggcc
ttatttttttttgggtttggaatatattggggttacatccatatattttacacaagggat
ttatga
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