Primulina tabacum: 142532831
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Entry
142532831 CDS
T11246
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ptab Primulina tabacum
Pathway
ptab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
142532831
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptab03021
]
142532831
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142532831
Transcription machinery [BR:
ptab03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
142532831
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
142532831
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
142532831
NCBI-ProteinID:
XP_075495450
LinkDB
All DBs
Position
18:complement(32266672..32273644)
Genome browser
AA seq
873 aa
AA seq
DB search
MDNLSRFQNPMPISNGSFNKIPPNRNDAVGMRPSPQIILDRFREMVREREEELGFFGGLG
EEAVSPLSMDEIVRFYEVVLSELTFNSKPTITDLTMIAGEQRAHAKGISEAICSRIIEVP
VDQKLPALYLLDSIVKNIGKGYISYFSAHLPEVFCEAYAQVHPNMNPAMRHLFGTWSAVF
PVSVLRKIEEQLQFSPSVSGQSPILNSLRAAESPRPTHGIHVNPKYLEARRQFGDSTVGA
EGASLTGGANRATSGVDAIKKSLPSTAKIMRSSTYRTGHTGSLVPSLDEFSINNSPRRVA
VGPSPSRLGINYGLSEEESSEWQMRNWQGKSNHHLKTSAAYNHNNDVHLRGPRALISAYG
IDEREKKMSSKRQRVEQLDANVIDSKGTLRTWLNTEEEEFDWEDMTPSNTSAPLLGHGAM
NKIAGVLPNVAGPTDFIGHIPPPNLPPQHAQSHLNANGGGSFLENRSNFASSYKRPPILG
DFSISDGISGGSSNVVSKLSSTRDSPAPEIRPDAAAALINSPYPVRLSSSHIVTPSAALP
PQLQSRGQFGTVNSWTHLSGITSMSHLNMPQIPSQSPGLVPLNLQRHAPVSFLQHNFLPS
QEFRPNLLLPSTASVPSQAKVPPPNYGYLQGHGPSIGLASSNLVPGGRPPNSGAVGPLST
LFSSLVAQGVISLTKQDSVVVDFDPDSLKMRHESAITALYGDLPRQCTTCGLRFKSQEEH
SKHMDWHVSRNRTLKTRKTKPSPKWFVSVSMWLHGAEALGTEAVPGFLPAENTVEKEETK
ELAVPADEDQNACALCGERFDDFYSDEMEEWMYKGAVYMYSPAGSTVGMDRSQLGPIVHA
KCKSDSNGIPPEDFTRVEGELVEEGGPKKKLRS
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atggacaatctttcaagatttcagaatcctatgcctatcagcaacggaagttttaacaag
ataccaccaaatcgaaatgatgccgttggcatgagaccctcgccgcagataattctggat
cgatttagggaaatggtgagggagagggaggaagaacttgggttttttggtggtctcggt
gaagaagcagtttcacctttaagtatggatgaaattgtacggttttatgaggtcgttcta
tcagagcttacatttaattccaagcccacaatcactgatctcactatgattgcgggtgag
cagagggcgcatgcaaaggggatttctgaagctatttgttcccggattatcgaggttcct
gtcgatcaaaagctgcctgccttataccttttggacagtattgtgaagaacataggtaaa
ggatatatttcatacttctctgcccacttgcctgaggttttttgtgaggcctatgctcaa
gtccaccccaatatgaaccctgcaatgcgccatctttttggtacatggtcagctgtgttc
cctgtgtcagtacttcgcaagattgaggaacagttacagttttccccttctgtaagtggt
caatctcctatattgaattctttgagagctgctgaatctcctcgacctacacatggaata
catgtgaaccctaaatatttggaagcacggcggcagtttggtgattcaactgttggagct
gaaggtgcaagcttaactggtggtgcaaaccgtgcaacttccggtgttgatgcgataaag
aagtctctgccatcaacggccaagatcatgcggtcctctacttatagaactgggcatacc
gggtcattagtgccttcacttgatgaatttagcatcaataattctccaaggagagttgct
gttgggccctcaccatctaggttggggattaattatggcctcagtgaggaggaaagcagt
gaatggcaaatgagaaattggcagggaaaatccaatcatcatcttaaaacttctgctgcg
tataaccataataatgatgttcatcttcgaggtcctagagctttgattagtgcctatgga
attgatgaaagggagaaaaaaatgagctccaaacgtcaaagagtagagcagttggacgcc
aatgttattgattcgaagggaactcttaggacgtggctaaacaccgaagaagaagaattt
gattgggaagatatgaccccgtcaaacactagtgctccgttgcttggtcatggagcaatg
aacaagattgctggagtcctgccaaatgttgctggccctaccgattttataggccatatc
ccccctcctaatttaccaccacagcatgctcagagtcatttaaatgccaacggaggtggt
tcatttttagaaaatagaagcaattttgcttctagttataaaaggcccccgatattaggt
gatttctcaatatcagatgggatttctggtgggtcctcaaatgttgtatccaagcttagt
tctactcgtgactctccagctcctgagattcgacctgatgctgctgcagctttaattaat
tcaccatatcctgtgaggttgtcgagttcacacattgtaaccccaagtgctgctcttccc
ccacaattgcaaagcaggggtcagtttggcacagttaattcttggacacatttgagtgga
attacaagcatgtcacatttgaacatgcctcaaattcccagtcagagtcctggattagtt
cctttaaatctccaacgtcatgcaccagtttcttttctacaacataattttttgccatct
caggagtttagaccaaatttgctcctgccttctactgcctcagtcccatcacaggcaaaa
gtaccacctccaaactatggatacttacaaggtcatggtccgtctattggtttggcctct
tctaatctagttcccggtgggcgtccacctaactctggagccgtggggccgctttcgact
ttatttagttctttagtggctcaaggtgtgatatcattgacaaagcaggattctgttgta
gtggattttgatccagacagtctcaagatgcggcatgaatctgcaataactgctttatat
ggtgatctgcccaggcaatgcaccacatgtggtcttcgattcaagagccaagaagagcac
agcaagcatatggattggcatgttagcaggaataggacattaaaaacccgtaaaacaaag
ccttctcccaagtggtttgtaagtgtaagtatgtggcttcatggtgcggaggcattgggg
acagaagcagttccaggttttttgcctgctgagaacaccgttgaaaaggaggagaccaaa
gaactggctgttcctgctgatgaggaccagaatgcttgtgcattatgcggagagcgtttt
gatgatttttacagtgatgagatggaagaatggatgtataagggggctgtgtacatgtat
tcaccggctgggtcaacagtaggaatggacagatcgcagttaggtcccatagtgcatgct
aaatgcaagtctgactctaatgggattccacctgaagattttacaagagttgaaggggaa
ttggttgaagaaggtggtccaaagaaaaagctgaggagctag
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