Primulina tabacum: 142533575
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Entry
142533575 CDS
T11246
Name
(RefSeq) 5'-3' exoribonuclease 3-like isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
ptab Primulina tabacum
Pathway
ptab03008
Ribosome biogenesis in eukaryotes
ptab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
142533575
09123 Folding, sorting and degradation
03018 RNA degradation
142533575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptab03021
]
142533575
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142533575
03009 Ribosome biogenesis [BR:
ptab03009
]
142533575
03016 Transfer RNA biogenesis [BR:
ptab03016
]
142533575
Transcription machinery [BR:
ptab03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
142533575
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
142533575
Ribosome biogenesis [BR:
ptab03009
]
Eukaryotic type
Pre-60S particles
RNases
142533575
Transfer RNA biogenesis [BR:
ptab03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
142533575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
New_glue
Motif
Other DBs
NCBI-GeneID:
142533575
NCBI-ProteinID:
XP_075496513
LinkDB
All DBs
Position
18:20269446..20288654
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AA seq
886 aa
AA seq
DB search
MGIPAFYRWLCNTFPDAVVDVTEDPPTFINGVKVPVDTTRPNPNGMEFDNLYLDMNNIIH
PCFHPENLASPESYDQVFKSVFKYVDRIFSLIRPRKLLYMAIDGVAPRAKMNQQRARRFR
TAKDAADEASITDKLRGSCTKEGTSRGTEGLDSNVITPGTEFMELLSSALRYYINLRMNH
DPGWQGIEVILSDASVPVEGEHKIMSYIRLQRNIPGFDPNTRHCLYGLDADLIMLGLAAH
EVHFSILREVSRKHKDPKRKNKAEVHNLKQRAGPYRQLESHLARQKFQLFNLWILREGLA
EHLKIPNPRVKVDTERLVDDFVLMCVFVGNDFIPHVPSLDISEGAISLLMRVYRKEFIRM
GGYLTDSFEVNLERLEHFLQVIASREVSTFRMRRKKQRTSEMGDGTGLVPDNVSVEGHNP
ENHSSEKESVISSNHVASEARILDKVKLGEVGWKERYYNEKFEVQTAEDRESVTKHAVLK
YVEGISWVMHYYYEGVCSWQWFYPYHYAPFASDFRSLGQLKIHFSLGKPFKPFSQLMGVL
PAASGQALPLFYRKLMIDPSSPILDFYPTDFELELNVGKPAWQAICKLPFIDECRLLNEI
SKVQHTLTDEEKWRNTLGLDRLFVHESHPLAAKISAFSERNKNNPKLNKVKVKRKINPKS
SSGMNGYIYLCNKPICPAEISSPFCDMEMIMKNRVISVFYKFPTFHPHIARLPEGVTMPE
MSISRHELLLPSFIRRKRKAIDHRRFARRPSPPPPPLEGRSTVAISAQPLDAESALASSH
PFVAGPSPSNVLSRPLPPTPPLRATVRPMMAISYQYLVAESASASSQTSVAVSSRADAHS
LVAGSSSASTHGDSRKPKRSRSQKRRAQRKRRKLNAIASQQIICPV
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgggaatcccggcgttttaccggtggttatgtaatacgttcccggatgcagtagtggac
gtgacggaagatcctcccaccttcattaacggcgttaaagtccctgttgataccacgagg
ccgaaccccaatggcatggagttcgacaatctctatctcgacatgaacaacattattcac
ccctgctttcatcccgaaaatttggcttctccggagagttatgatcaagtgtttaagtcg
gtgtttaagtacgttgatcgaatattttcattgatcaggcctcgcaagcttctgtacatg
gcaattgatggtgtggcaccgagggccaagatgaatcagcagcgtgctagacgattcaga
accgctaaagatgcggctgatgaggcctcaataacggataaactgagaggtagctgcaca
aaggaaggtacatctcggggaactgaaggtttagattcaaatgtaattacccctgggact
gaatttatggaattactgtcatctgctcttcggtattatataaatttgaggatgaaccat
gatccaggttggcaagggatcgaggtgatcctttctgatgccagtgtccctgttgaggga
gagcataaaattatgtcttacattcggctgcaaagaaatattccaggattcgatccaaac
acacgacattgtttatatggactggatgcagatttgatcatgcttggtttggctgcccat
gaggttcacttctctattctaagagaggtttctagaaaacacaaagatcccaagaggaaa
aataaagcagaagttcataacctgaagcaacgtgctggtccgtatcgacaactggaatcc
catttagcgagacaaaaattccagttattcaatttgtggatactgagggaaggattggca
gaacacctgaaaataccaaatccaagagttaaagtagataccgagcgattagtagatgat
ttcgttctcatgtgtgtatttgtcggaaatgactttatacctcatgtgccatcattagat
atatcagagggagctatcagcttgcttatgcgtgtctacagaaaagagtttattcggatg
ggtggttaccttactgattcttttgaggtaaatttggaaagattggaacactttttacaa
gttatcgcttcacgtgaggtttcaacttttaggatgcggaggaagaagcaaagaacatca
gaaatgggcgatgggactggactcgtccctgataacgtgagtgtggagggacacaatccg
gaaaatcattccagtgagaaagagagtgtcatttcctccaatcatgtggcgtctgaagct
aggatcctggacaaggttaaattaggagaagttggttggaaggagagatactacaatgaa
aaatttgaggttcaaacagctgaagaccgtgagagtgttactaaacatgctgtcttgaaa
tatgttgaagggatcagttgggttatgcattattattatgaaggtgtatgctcctggcaa
tggttttatccctatcattatgctccatttgcttctgattttcgtagtcttggccagctc
aaaatccatttttccctgggaaaaccctttaaacctttcagccaattaatgggtgtgctc
cctgctgccagcggacaagcacttccattgttctacaggaaattaatgattgatccatca
tcccctattttggatttttatcctactgattttgagctcgaattgaacgtggggaagcca
gcttggcaggctatttgtaagctaccttttattgatgaatgccggcttcttaacgaaatt
tcaaaagtgcaacatacattgacggatgaagagaagtggaggaacactttgggccttgat
agactttttgttcatgagtcacatcccttagcggcaaaaatatctgccttctcggagcgg
aacaaaaataatccgaagttgaataaagtaaaagtgaagaggaaaattaatcctaaatcc
agtagtggaatgaacggttatatctacctctgcaataagcccatttgtcccgctgaaatc
tcttcccctttctgtgacatggagatgatcatgaaaaatagagtgatatcggtcttctac
aagtttccaacttttcatcctcacatcgcgagactaccagaaggagtgaccatgcctgaa
atgtctattagcaggcatgaattgctacttccaagtttcattaggcgcaagagaaaggct
attgatcaccgcaggtttgccagaaggccctcgccaccccctcctcctttggaaggacga
tctacagtagcaatatcggcccaacccttagatgctgaatctgctttagccagctctcat
cccttcgttgctggcccctccccctccaacgtcctatccaggcccttaccacccactcct
cccttacgagccacagtacgacctatgatggcaatatcttatcaatacttagttgccgaa
tctgcctccgccagctctcagacctcagtagctgtatcctcccgagccgatgcacattct
ttagttgctggatcatcctcggccagcacccatggagacagtcgaaaacccaaaagaagt
agatctcaaaagaggagggcccaacgtaaaaggagaaaattgaatgccattgcatcacag
caaattatatgtcccgtgtga
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