Primulina tabacum: 142534557
Help
Entry
142534557 CDS
T11246
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
ptab Primulina tabacum
Pathway
ptab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
142534557
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptab03021
]
142534557
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142534557
Transcription machinery [BR:
ptab03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
142534557
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
142534557
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
Torus
zf-CCCH
zf-CCCH_2
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
142534557
NCBI-ProteinID:
XP_075497546
LinkDB
All DBs
Position
2:49446113..49452602
Genome browser
AA seq
688 aa
AA seq
DB search
MDDAEGGLSFDFEGGLDPGPTHPTASVPVIQSSPDPTAVSASAGLSTINPSNAPVPAAEG
IGGGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQDCVYKHT
NEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLASYNYGNSNRFFQNR
NTNYAQPVDKPQFLQGPNDTNQLEKINTTGDGSVHQQPQLVLQTQQLGGQAQGQIIPNGQ
QNQAHRTATPLPQGTSRYFVVKSCNVENLELSAQQGVWATQRSNEAKLNEAFDSVENVIL
IFSVNKTRHFQGCAKMTSRIGGSVSGGNWKHAHGTTAHYGRNFSLKWLKLCELSFNKTRH
LRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSDLMAVSLAAESKREEEMAQGVN
VENRNENPDIVPFEDNEEDEEDESEEEDESPGQVFGAQGRGRSRGMMWPPQIPLARGARP
FAGARGFPPNMMGADGFSYRAMNPDGFPVPDIFGMAAPRGFGPYGPRFSGDFLGPAPGMM
FPGRPSGGFGMIMGPGRAPFMGIGAAAMTRAGRPVGMPPFYPPPQSQLPQNSYRVNRDQR
APTGHRSDSSDQVKGPEMLGSGSGPEDEGRYQQSGKTQQDDHFSAGNYRNDESGSEDEAP
RRSRHGEGKKKRRSLEADAATISDEPIH
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggatgatgcagaagggggtttaagcttcgacttcgagggcgggttggacccggggccc
acacatccgactgcatcggtacccgtgatccaatcatcgccggacccaacagcggtttcc
gcatccgccggacttagtaccattaacccttccaacgcaccggtgccagcggcggaagga
attggcggtggaagacgtagcttccggcagacggtgtgtcgtcactggttgcgatcgttg
tgcatgaaaggcgatgcctgtgggttccttcatcagtacgataaatcgcggatgccagtt
tgccggttttttcgtctgtacggagagtgccgagagcaggattgtgtatataagcacacg
aatgaggatatcaaggaatgcaatatgtataaattgggattttgtccaaatggcccagat
tgtaggtataggcatgcaaagctgcctggacctccgcctcctgtggaagaagttcttcag
aagatccagcaattggcttcttacaactacggaaactcaaacagattttttcaaaaccgt
aatactaattatgcccagccagtagataaacctcagtttctacaaggacccaatgataca
aatcaattggaaaaaattaacacgacaggggatggtagtgtgcatcaacaaccacagcta
gtactgcagactcagcagctgggtggacaagctcaaggacagattattcccaatggccag
caaaatcaagctcataggactgcaacacctctgccccaaggaacttctaggtactttgtg
gtcaaaagttgcaatgttgagaatctggaactctctgctcaacaaggtgtatgggcaact
cagcgaagcaatgaggctaaacttaatgaagcttttgactctgttgagaatgtcattttg
attttttcagtcaacaagactagacattttcagggctgtgcaaagatgacatccagaatt
ggtggctccgtcagtggaggaaactggaagcatgcgcatggaacaactgctcattatgga
cgaaatttttctctcaaatggttaaagctctgtgaactgtccttcaacaaaactcggcat
ttgagaaacccatacaacgagaacttaccagtgaagataagtagagattgccaagaactg
gagccctctattggtgagcagttggcatccttgctctacctagagccagacagtgatctt
atggctgtctctcttgcagcagaatcaaaacgagaggaggagatggcacagggagtaaac
gttgaaaataggaacgaaaacccagatattgtgcccttcgaagataatgaggaagatgaa
gaggacgaaagtgaagaagaagatgaaagccctggacaggtctttggagctcaaggcagg
gggaggagtagaggaatgatgtggcctcctcaaatccctcttgcacgtggagctcggcct
tttgcaggggctcgaggttttcctcctaacatgatgggcgctgatggattttcttatcga
gctatgaatcctgatggttttcctgtgcctgatatttttggtatggctgctccccgtgga
tttggaccatatggtcctaggttctctggtgattttttaggtcctgcccctggtatgatg
ttccctggtcgaccttcgggtggatttgggatgattatgggtccagggagggcacctttc
atgggtattggagctgctgccatgactagagccggtaggccagttggtatgcctcctttt
tatccaccacctcaatcacaacttcctcaaaattcttatcgagttaacagagatcagagg
gcaccaacaggtcataggagtgatagctcagatcaagttaagggtccagagatgctaggc
tctggcagtggaccagaagatgaagggcgatatcagcagagcggtaaaactcaacaagat
gatcatttcagtgccggaaactacaggaatgatgaaagcggaagtgaagatgaggctcca
agaagatctagacacggagaaggaaagaagaagaggcgtagtttggaagcagatgcagcc
actatctccgatgaacccatccactga
DBGET
integrated database retrieval system
