Primulina tabacum: 142538212
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Entry
142538212 CDS
T11246
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
ptab Primulina tabacum
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142538212
03041 Spliceosome [BR:
ptab03041
]
142538212
03036 Chromosome and associated proteins [BR:
ptab03036
]
142538212
Enzymes [BR:
ptab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
142538212
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
142538212
mRNA cycle factors
Common to processing body (P body) and stress granule
142538212
Spliceosome [BR:
ptab03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
142538212
Chromosome and associated proteins [BR:
ptab03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
142538212
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Mcm-like_N
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
142538212
NCBI-ProteinID:
XP_075499685
LinkDB
All DBs
Position
3:complement(50917226..50924242)
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AA seq
613 aa
AA seq
DB search
MPTSWADSVDKVPAGDGTGAVSRVKSSYVPPHLRNRPLSSDDPAAPFSYAGVASGNDRQG
YGGQPIGASYPGGYRNDRSAGITRTGGWNNRSGSWDRGKEREVNPFPDDIDSEEAFTSQE
NTGINFDAYEDIPVETSGRNVPPPVNTFAEIDLGEALNRNIKRCKYVKPTPVQRYAIPIS
IAGRDLMACAQTGSGKTAAFCFPIISGVMKSSQSTPRPPHMPRMSFPLALILAPTRELSI
QIHEEAKKFSYQTGVRVVVTYGGAPINLQLRELERGVDILVATPGRLVDLLERARVSLQM
IRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGIRQTLLFSATFPKEIQRLAADFLSNY
VFLAVGRVGSSTDLIVQRVEYVLETDKRSHLMDLLHAQLANGVHGKQALTLVFVETKKGA
DALEHWLSINGFPATAIHGDRTQQEREYALRCFKSGKTPILVATDVAARGLDIPHVAHVV
NFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNASLAKSLTDLMQEANQEVPAWLSRF
AARSSLYGKNRRGGGGGGGSGGRFGSRDFRRDASFGRGGMEYYGGGQINGGYGSSSSGGH
GGGYGPSVTSAWD
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgccaacatcatgggctgattcggttgataaggtaccggcaggtgatggcaccggggca
gtttcccgtgtcaaatcaagttatgttccgccgcatcttagaaacagacctctttcatca
gacgatccagcagctccattttcctacgctggtgttgcgtctggaaatgatcgacaagga
tatggtggccaacccataggtgcaagttatcctggtggttatagaaatgatagaagcgca
ggaatcacccgcactggtggatggaataatagaagtggtagttgggatcgcgggaaggag
agagaggtcaatccttttccagatgacattgattctgaagaagcttttacctcacaggag
aatactgggatcaattttgatgcttatgaggatattccggtcgagactagtgggcgaaat
gttcctcctcctgtgaatacatttgctgagattgatttaggtgaagcattaaatcgaaat
attaagaggtgcaaatatgtgaaacccactcctgtgcagcggtatgccataccaatttca
attgctgggcgggatttgatggcttgtgctcagactggatctggaaagacagctgcattt
tgcttcccaatcataagtggagtcatgaaaagcagccaatctactccaagaccacctcac
atgccacgcatgtcatttcctcttgctctcattcttgctcctaccagggagctgtcaatc
caaattcatgaagaagctaaaaaattttcatatcaaactggagtgagggtggttgttact
tatggtggtgcacccataaatctacagcttcgagaacttgaaagaggtgtggacatactt
gttgccactcctggacgcttggtggatttattggaaagggcaagagtctcattgcaaatg
attaggtatctagccctggatgaggcagatagaatgctggacatgggttttgaacctcaa
ataaggaaaatagtgcagcaaatggacatgcctcctcctggtattagacaaacgttgctg
tttagtgccacatttccaaaagaaatccagaggctagcagcagattttctgtcgaattac
gtgtttttggcagttggaagagttggttctagcactgatctaattgttcaaagggttgaa
tatgtgcttgagacagacaaaagaagtcatttgatggacctccttcatgcacagttggca
aatggtgttcatggcaagcaagctcttacactagtttttgtggaaacaaaaaagggagct
gatgcactcgaacattggcttagcattaatggtttccctgccactgccatccatggtgat
cgaactcaacaggagcgagaatatgctttgagatgtttcaaaagcggtaaaacaccaata
ttggttgcaacagatgtagcagcacggggtctggatatcccccatgttgcacatgtggtc
aactttgatcttccaaacgacattgatgactacgtccaccgtataggccggacaggccgt
gctggaaaatccgggttggcaactgcgttctttaacgagaacaatgcctcactggcgaaa
tcattgactgatttgatgcaagaagccaaccaagaagttccggcttggctttcccgtttt
gcagccaggtcttctttgtatggaaagaatcgtcgcggagggggtggagggggtggttcg
ggaggaagatttggtagccgtgactttcgtagagatgcctcgtttggtagaggcggaatg
gagtactatggtgggggtcaaattaatggtggatatggcagcagcagctctggtggtcat
ggtggaggatatggtcccagtgtgactagtgcatgggactga
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