Primulina tabacum: 142538377
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Entry
142538377 CDS
T11246
Name
(RefSeq) LOW QUALITY PROTEIN: putative E3 ubiquitin-protein ligase RHC2A
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
ptab Primulina tabacum
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ptab04131
]
142538377
04121 Ubiquitin system [BR:
ptab04121
]
142538377
Enzymes [BR:
ptab01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
142538377
Membrane trafficking [BR:
ptab04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
142538377
Ubiquitin system [BR:
ptab04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
142538377
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1117
zf-RING_2
Zn_ribbon_19
zf-C3HC4_2
zf-rbx1
zf-RING_11
zf-RING_UBOX
zf-C3HC4
zf-ANAPC11
zf-RING_5
zf-C3HC4_3
Rad50_zn_hook
Prok-RING_4
zf-Nse
Motif
Other DBs
NCBI-GeneID:
142538377
NCBI-ProteinID:
XP_075499826
LinkDB
All DBs
Position
1:7131928..7133790
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AA seq
381 aa
AA seq
DB search
MSTSSNFWCYRCNRFVTVLTQDSISCTDCNGGFVEDVDTPSRSLLSDSRRHXFPAASRNL
DSSSGRPGPALSSRLRRSRMSGGDRSPFNPVIVLRGLNEGGDGREAAAGGGTGFELYYDD
GAGLGLRPLPASIADFFLGSGFDRLLDQLGQIEVNGIARIERNPRASKAAIESMPTVEIS
GQHIGLESHCAVCKEPFELGAEAREMPCNHLYHQDCILPWLSLKNSCPVCRHELPTDNDN
ANRIHDATEVNRGANEVVNDDETVGLTIWRLPGGGFAVGRFSGGRRGGERELPVVYTEVD
GGFNNNGVSRRISWGSRGIVSRERSGLRRVLCNFFACFGRGGSSNSSSDSRMSRRSGLLP
SVSSTSRQFSRRGYEANGETL
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacgtcttcgaatttctggtgttacagatgcaaccggttcgttacggttttgacc
caagattccatcagttgcaccgattgcaacggcggattcgtggaagacgttgacactccc
tctcgatctctgctctctgactccaggagacacncttttcctgcagcttcgcgaaacctc
gattcgagctctggacgtccagggccggctttgagttcgaggttgagacggagccgaatg
agcgggggagataggtcgccgttcaatccggttatcgttctccgtggtcttaacgagggc
ggggatggaagagaagctgctgctggaggtggtactggattcgagctgtattatgatgat
ggagctgggttgggtttaaggccgttgcccgccagtatagcggatttctttcttgggtcg
ggttttgacagattgctcgatcaattgggacaaatcgaggttaatgggattgctagaatt
gaacgaaacccgcgtgcttctaaagctgccattgaatctatgcccacagtcgagataagt
gggcagcacatagggcttgaatcgcactgcgcagtttgtaaagagccctttgagttggga
gctgaggctcgtgaaatgccttgcaatcatttataccatcaagattgtattttaccctgg
ctttccttgaaaaattcgtgccctgtctgtagacatgagttaccgactgataatgacaac
gctaacagaattcatgatgcgacagaagtgaacaggggtgcgaatgaagtggtgaatgat
gatgagaccgtgggactgactatatggagattaccaggcggagggtttgctgttggaaga
ttttctggagggagaagaggcggagagagggagttacctgtggtttacacagaagtggat
ggtggttttaataacaacggggtttcaaggagaatttcttggggttctagaggaatcgtg
tcaagggagagaagtggattgaggagggttttgtgtaatttctttgcttgttttggtcga
ggtggatcctctaattctagttcggattctagaatgagtcggaggagtggcttgctaccg
tcggtcagctcgacttcgagacaatttagtagaaggggttacgaagctaatggcgagact
ttataa
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