Primulina tabacum: 142539242
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Entry
142539242 CDS
T11246
Name
(RefSeq) structural maintenance of chromosomes protein 3
KO
K06669
structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
Organism
ptab Primulina tabacum
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ptab03036
]
142539242
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ptab00535
]
142539242
Chromosome and associated proteins [BR:
ptab03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
142539242
Meiosis-specific proteins
Cohesin complex and associated proteins
142539242
Proteoglycans [BR:
ptab00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
142539242
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_21
AAA_23
AAA_15
AAA_29
Motif
Other DBs
NCBI-GeneID:
142539242
NCBI-ProteinID:
XP_075500656
LinkDB
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Position
3:2040947..2057915
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AA seq
1216 aa
AA seq
DB search
MYIKQVVIEGFKSYREQVATETFSPKVNCVVGANGSGKSNFFHAIRFVISDLFHNLRSEE
RQALLHEGAGHQLLSAFVEIVFDNSDNRIPVDKEEVRLRRTIGVKKDEYFLDGKHITKTE
VMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLKEIGGTRVYEERRRESLKIMQ
ETGNKKKQIIQVVQYLDDRLRELDEEKEELKKYQQLDKQRKSLEYTIYDKELHDAKQKLV
EIEEARNIVSETSAKMFNSVSNAHERSKVLDKSLKDLTKEAQILSREKEAIEKQRTEAIK
KRAKLELDDRDLQEKIQGNIKAKEDAVKQLVLLDKEIQGSYAELKTINEQYENQVGQEEK
LTRGIMEREKKLSILYQKQGRATQFASKTARDQWLQKEIKDYEQVLSSNRVQERKLRDEI
DLLEKDIREQDAYIKGRKSEAAEFESLISGYRQGYNHYKVERDKLHDERKSLWGRESELS
AEIEQLKSEVVKAEKSLDHATPGDIRRGLNSVRRICRENEIGGVFGPLFELLDCDEKFFT
AVEVTAGNSLFHVVVENDEISTKIIRHLNAQKGGRVTFIPLNRVQAPHVTYPQSSDVVPL
LKKLRFSQDYNSAFAQVFAKTVICRDLDVATRVARTDGLDCITLEGDQVNKKGGMTGGFY
DYRRSKLKFMKTIRENTKSINMKEVELEKVKFKLQDILLSFHLLAYYQFILKINELVGEQ
QRNDAKLAHEKSVLEQIRQDAMNAERQKQSISKSLEKKEKLLTSISAQIEQNRANISMKE
DEMGTELVDHLTPEDKDLLSRLNPEITKLKEQLITCRSSRMETETRKDELEMNLSTNLVR
RKEELEAVKSSGEIDMLQEEAELKSQDLAYAKSLVDQLTQQLKRASDSIDDRDRKLKEIK
VEKENLKNLEDRYQSTLQDEAKELEQLLSKKNIYLAKQEEYSKKIRELGPLSSDAFEIYK
RKNIKELYKLLHKCNEQLQQFSHVNKKALDQYVNFTEQREELQRRQAELNAGDEKIKELI
SVLDMRKDESIERTFKGVAKHFREVFSELVQGGHGFLVMMKKKDSDDIDNDQDDDDPRPA
DAEGRIEKYIGVKVKVSFTGQGETQSMKQLSGGQKTVVALALIFAIQRCDPAPFYLFDEI
DAALDPQYRTAVGNMVRRMADMAGTQFITTTFRPELVKVADKIYGVTHKNRVSRVNVVSK
EDALDFVEHDQSHEVD
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgtacataaagcaggttgtaatagaagggtttaagagttaccgggagcaagttgccact
gaaacattcagtcccaaagtcaactgtgttgttggtgctaacggatctggcaaatctaac
tttttccatgcaatacgctttgtgataagcgatttatttcataacctacgcagcgaagaa
aggcaagcgttgcttcatgaaggtgcaggccaccaattattatctgcgtttgtggagatc
gtgttcgataactctgacaaccgtattccagttgacaaggaggaagtacgtctgaggaga
actattggtgttaaaaaagatgaatatttcttggatggaaaacatataacgaagacagaa
gtcatgaatctgctggaaagtgctggattctctcgttctaatccgtattatgttgtgcag
cagggaaagatagcgtctctaacattgatgaaggattcagagagactggatctgctgaaa
gaaattggtggaactcgagtttacgaggagagaagacgtgaaagtttgaaaatcatgcag
gaaacaggtaataagaaaaagcaaattattcaggttgtccaatacttggatgacagactc
cgggaacttgatgaagaaaaagaggaattaaaaaaataccagcaacttgataagcagcga
aaatctctagaatacactatttatgacaaggaacttcatgatgccaagcagaaattggtg
gagatagaagaggctcgaaacattgtttctgaaacatctgccaagatgtttaatagtgtt
tcaaatgcccatgaaaggtcaaaagtgttggacaagtcgctgaaggatctgactaaagaa
gctcagattctaagcagagaaaaagaagcaatagagaaacaaaggacagaagctattaaa
aagcgagcaaaacttgagcttgatgacagagacctgcaagagaagatccaggggaatatt
aaagccaaggaggatgctgtgaaacagcttgtacttttggataaagaaattcaaggatct
tacgccgagctcaaaacaatcaacgagcagtatgagaaccaagttgggcaggaggagaag
ttgactcgaggtattatggaacgtgaaaagaagcttagcattctgtatcagaaacagggc
cgtgctacccagtttgcaagtaaaaccgctcgtgaccagtggcttcaaaaagaaattaag
gattatgaacaagttttatcttctaaccgtgtacaggagagaaaacttagggatgaaatt
gatctgcttgaaaaagatatcagagagcaagacgcctacattaagggcagaaaaagtgaa
gctgctgagtttgaatctctcatttctggatatagacaaggctacaaccattacaaagtg
gagagagacaagttgcatgacgagcgaaagtcattgtggggaagagagagtgagctttct
gctgaaattgaacagctcaagtcagaggttgtgaaagcagagaaaagccttgatcacgcg
actcctggtgatataagaagaggactgaattctgtgagaagaatatgtcgagagaatgaa
attggtggtgtgtttggccctctttttgagttgctggattgtgatgaaaagttttttaca
gcagttgaagttactgctggaaacagcttatttcacgtggtggttgaaaatgatgaaata
tcaaccaagataattaggcaccttaacgcacagaaaggcggtcgggtcacattcatcccg
ttaaacagagtgcaagctccacatgttacttatccacagagttctgatgtggtaccgctt
ttgaagaagttaaggttctcccaggattataactctgcgtttgctcaggtgtttgcaaag
actgtaatttgccgtgatttagatgttgctacgagggttgcccgtacagatggcctggac
tgcatcactttagaaggtgatcaagtaaacaaaaaaggtggcatgactgggggattttat
gactacaggcgttcaaaactgaaattcatgaagaccattagagaaaatacaaagtcgatt
aacatgaaggaagttgaactggagaaagttaaattcaaacttcaagatatccttcttagc
tttcaccttctagcatattaccaattcattcttaaaatcaatgaactggtgggagagcag
cagagaaatgatgccaagctggctcatgagaaatctgtacttgaacagattaggcaggat
gcgatgaatgctgagaggcaaaagcagtccatttctaagtctcttgaaaagaaagaaaag
ttactcaccagtatatcagctcaaatagagcagaatagagctaatatttcaatgaaagaa
gatgaaatgggaacagaacttgttgatcacttgacacctgaagataaagacttgctctct
cggttgaatcctgaaataactaagcttaaggagcagctaatcacttgcaggagttctcgg
atggagactgaaacaagaaaagatgagcttgagatgaatctatctacgaatctagttagg
cggaaagaagagttggaggctgtcaaatcatcgggagagatcgatatgttacaagaagaa
gctgagttaaaaagtcaggacttggcctatgcaaagtcattagttgatcaactgactcaa
cagctgaagagagcgtctgatagcatcgatgatagggatcggaaattgaaagagattaaa
gttgagaaagaaaatctaaagaatttggaagataggtaccaatccactctacaggatgaa
gcaaaagaactggagcaactacttagtaagaaaaatatatatttggccaaacaagaggag
tactcaaagaaaattcgggaactgggtcctctatcttccgatgcgtttgaaatttacaaa
cggaaaaacattaaagagctgtataagctgcttcacaagtgtaatgagcaactgcagcag
ttcagccatgtaaacaaaaaagcacttgatcaatatgtaaattttaccgagcaacgagaa
gagctccaaagaagacaagctgagttgaatgcgggtgacgagaaaatcaaagaacttata
tcagttttggatatgagaaaagatgaatcaattgagcgtacatttaaaggtgttgctaag
catttccgtgaagtattctcggaactcgtgcaaggaggtcatggatttttggttatgatg
aagaaaaaggacagtgatgacattgataatgaccaagatgatgatgatcctcgtcctgca
gatgcagaggggaggatcgagaaatacattggtgtcaaagtgaaggtttcttttaccggg
caaggggaaactcagtccatgaaacaattatccggaggtcagaagactgtggtggcattg
gctttaatttttgccattcagcgatgtgatccagctccattttatctttttgatgagata
gatgctgcacttgatcctcagtacagaactgctgttggaaatatggtacgtcgaatggca
gacatggctggcactcagttcataaccacgacctttcgtccagagcttgtgaaagtcgct
gacaagatttacggtgtgacacacaaaaacagagtcagccgtgttaatgttgtctccaag
gaagacgccttagatttcgttgagcatgatcaatcacacgaggttgattga
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