Primulina tabacum: 142539367
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Entry
142539367 CDS
T11246
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
ptab Primulina tabacum
Pathway
ptab04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
142539367
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ptab04121
]
142539367
Ubiquitin system [BR:
ptab04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
142539367
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Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_4
F-box-like
F-box
LRR_NXF1-5
LRR_8
Motif
Other DBs
NCBI-GeneID:
142539367
NCBI-ProteinID:
XP_075500896
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Position
3:3416343..3420015
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AA seq
587 aa
AA seq
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MAYAFPEEVLENVFSFLSSDKDRNAVSLVCKSWFEIERWCRRRIFIGNCYAVTPKIVIRR
FPDVRALELKGKPHFADYNLVPEGWGGYVYPWIVAMSRSYPFLEEIKLKRMVVSDESLEM
ISKSFKNFKVLVLSSCEGFTTEGLASIAANCRNLRELDLGESEVEDLSSHWLTHFPDSYS
SLESLNISCLGSEVNFSVLERLVVRCPNLKTLRLNRAVPLEKLPILLQHAPQLSDLGTGA
YFAEIRPDIFSNLADAFSLCKQLKSLSGFWDVVPAYVPAMYCVCSRITSLNLSYATIQSM
DLIKLASQCRNLQRLWVLDYIEDIGLEAIAASCKDLQELRVFPSDPFVNEPNVSLTEQGL
VAISEGCPKLQSVLYFCRQMSNAALIAIAKNRPNFIRFRLCILEPRAPDYLNLEPLDNGF
GAIVENCKELRRLSLSGLLTDKVFEYIGTHAKKLEMLSIAFAGDSDLGLHHVLSGCESLR
KLEIRDCPFGDQALLANAGKLETMRSLWMSSCSVTFGACKLLGQKIPRLNVEVIDENGLL
DSRPESCPAEKLYVYRTVAGQRVDMPGFVWTMDADGQAFVKHKLLGH
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atggcgtacgcgttcccggaggaggttctggagaacgttttctcgttcctgagctctgat
aaagatcggaatgcggtctcgttggtgtgcaagtcgtggttcgagatcgagaggtggtgc
cggaggaggattttcattggaaattgctacgccgtgacgccgaaaatcgtgatccggagg
ttcccagatgtgcgggcgttggagctgaaggggaagccgcacttcgcggattacaacctc
gtgccggagggttgggggggttacgtttacccgtggatcgtcgccatgtccagatcttat
ccctttctggaggagatcaagcttaagaggatggtagttagtgacgagagcctggagatg
atctcgaaatcgtttaagaatttcaaggtgttggtgctctcttcatgcgaaggtttcacc
accgaaggtctagcttctatcgccgcaaattgcaggaatctccgagaattagacttgggg
gagagtgaagtggaggacttgagtagtcattggctaacccattttccggacagttattct
tcactagagtctcttaatatatcttgcttggggtcagaggtgaacttttctgtgttggag
cgattggttgtccgatgcccaaatctgaaaacacttaggctaaaccgtgctgtacccctt
gagaagctacctattctacttcagcacgcaccccagttgtctgatctaggtactggtgcc
tattttgctgaaattcgcccggatatcttctcaaacttggcagatgccttttcactttgc
aagcaactcaaaagcttgtctggtttttgggacgtggttcccgcatatgttccagcgatg
tattgtgtttgctctagaattacttccttgaatttgagttatgccactattcagagcatg
gatctcatcaagcttgctagccaatgtcggaacttacagcgactatgggttctggattac
atagaagatattggtcttgaagctattgctgcatcttgcaaggacctgcaagagcttcgt
gtatttccttcagatccttttgtaaatgaaccaaatgtatctttgacagaacaagggctt
gtagctatatcagagggctgccccaaacttcagtctgttttatatttctgccgccagatg
tcaaatgctgcattaattgcaatagcaaaaaatcgcccaaattttatccgtttccgattg
tgtattcttgagcctcgagcccctgattacttgaaccttgaaccacttgacaacggtttt
ggggctattgtagaaaactgcaaagaactgcgtcgcctctctctctctggtctcctcaca
gataaagtatttgaatatattgggacacatgctaagaaattggagatgctctctatagct
tttgctggggatagcgacttgggcctacatcatgtgttgtcggggtgtgaaagtcttcga
aaattggagatcagagactgcccatttggggatcaggcactcttggccaacgctgggaag
ctggagacaatgcgatccctttggatgtcttcttgctctgttacttttggagcatgcaag
ctactcggtcagaagataccccgactcaatgttgaagttatagacgagaatggtctccta
gattctaggcccgaaagctgccctgctgagaaactttatgtttacaggacggttgccgga
caaagggtggatatgcctggttttgtttggacaatggatgcagatgggcaggcttttgtg
aaacacaaactcttaggccattag
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