Primulina tabacum: 142539564
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Entry
142539564 CDS
T11246
Name
(RefSeq) ATP-dependent RNA helicase-like protein DB10 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ptab Primulina tabacum
Pathway
ptab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142539564
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ptab03041
]
142539564
03009 Ribosome biogenesis [BR:
ptab03009
]
142539564
Enzymes [BR:
ptab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
142539564
Spliceosome [BR:
ptab03041
]
Complex A
U1 snRNP components
U1 related factors
142539564
Complex B
142539564
Ribosome biogenesis [BR:
ptab03009
]
Eukaryotic type
Pre-60S particles
Helicases
142539564
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Cas3-like_C_2
SUKH-4
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
142539564
NCBI-ProteinID:
XP_075501231
LinkDB
All DBs
Position
3:5458332..5465161
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AA seq
639 aa
AA seq
DB search
MVAAATASSTGIRYAPEDPTLPKPWIGLVDGSTGYVYFWNPETDVTQYERPVAPSLASFV
PSHKSLSSSVQKSSHGNRNNGDAADDKYIKVSNGGNGPVKNASGSGSYQTARIRSDYLQN
SSNGKTNAGHGSYTSNGADSSLSVESFRIQHEITVTGDLEIQPFTTFEATGFPPEILREV
RHAGFSVPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPGFIHLKQLRNNPILGPTV
LVLSPTRELATQILDEAVKFGRSSKITCTCLYGGAQKGPQLRDLFRGVDIVVATPGRLND
ILESRKVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPSHRQTLMYTATWPKEVRRIA
ANLLVNPIQVNIGSVDELAANSAITQHVEVMSSGHKLRRLEQIIRSQEPGSKVIIFCSTK
KKCNQLAGALAQQFVAAAIHGDKSQAERDHVLTQFRTGRTPVLVATDVAARGLDIKDIKV
VINYDFPNGIEDYVHRIGRTGRAGATGVAYTFFCSDDAKHAAALVKLLEGANQHVSVEIR
DMAASRGGAAGKSRHQFGSGPRRLNDSTFGERNGARSSFGMSVLTDNRAGGRDSDHRRDR
TGAAGSHQYKSSQINGKMADENRSGRSRSRSPNRKSRWE
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atggtcgctgctgcaactgcctcatcaactggcatacgatatgcaccagaagatcccact
ctcccaaaaccatggataggtttggttgatggcagtacaggttatgtttacttttggaat
ccagagactgatgtaactcagtatgagagacctgtagctccttcgctggcaagctttgtt
ccatctcacaaatctttgagttcatcggttcaaaaatcgtcccatggcaatcgcaataat
ggtgatgctgctgatgataaatatatcaaagttagcaatggtgggaatggtccagtaaaa
aatgcctccggctctggaagttatcagactgccaggatcagatcagattatttgcaaaat
tcatcaaatgggaaaaccaatgctggacatggatcatatacatctaatggtgctgatagc
agtttgtctgttgagtcttttcgcatccaacatgaaattacagttactggagatctggaa
atccaacctttcaccacttttgaagccactggttttcctcctgagattttaagggaggta
cgacatgctggtttttctgtgccgactcccatccaggcacagacatggcctattgctctg
caaggtcgtgatattgtagccattgccaagacaggctcgggaaaaactttgggttacttg
attccaggtttcattcatctgaagcaattgcgtaacaatcctatattaggaccaacagtt
ttggtgttgtctccaacaagagagttggcaactcagatactagatgaagccgtgaagttt
ggaagatcatctaagataacttgcacgtgcttatatggaggcgcacaaaaaggccctcag
ctgagagacctgttcaggggcgtagatatcgtggtcgctactcctggtcgtttgaatgat
attttggaatcgagaaaagttagtctccgtcaagtttcatatttggtgttagatgaggca
gaccgaatgctggacatgggatttgaaccccagatcaggaaaattgtgaaggaagttcct
tctcacaggcaaaccctgatgtacactgctacatggccaaaggaggtgcgcagaattgct
gctaatctattggttaaccctattcaggttaacattggcagcgtcgacgaacttgctgca
aacagtgcaataacacagcatgttgaagttatgtcatcagggcataagttgaggcgccta
gaacagataataagatctcaagaaccaggatcgaaggttattattttctgttctacaaag
aaaaagtgcaaccaacttgctggtgctctagcccaacaatttgtagctgcggcaatacat
ggagacaaatctcaggctgagagggatcatgtcttgactcagtttcgcacaggacgaacc
ccagtgcttgtagccactgatgtcgctgcccgtggcctggacatcaaggatatcaaggtg
gtgataaattatgacttcccgaatggaatagaggactatgttcacagaataggaagaact
gggcgggcaggtgccactggagtggcttatacttttttctgcagcgatgatgctaagcac
gcggctgctttagtcaagcttttggaaggagcaaatcaacatgtctcagttgaaattcgt
gatatggccgcctcacggggtggtgcagcaggaaaatccaggcaccagtttggttcaggc
cctagaaggcttaatgattctacctttggtgaacgaaacggggcaaggagttcttttgga
atgtcagtattgacggataacagggctggcggtcgtgactctgaccacagacgtgataga
actggtgccgctgggagccatcaatacaagagctctcaaattaatggcaaaatggctgat
gaaaatagaagcggcagaagtcgcagtagatccccaaaccggaagtcaagatgggagtga
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integrated database retrieval system
