Primulina tabacum: 142540404
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Entry
142540404 CDS
T11246
Name
(RefSeq) nuclear pore complex protein NUP88 isoform X1
KO
K14318
nuclear pore complex protein Nup88
Organism
ptab Primulina tabacum
Pathway
ptab03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
142540404
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142540404
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
142540404
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup88
CREPT
Spc7
V-SNARE
Motif
Other DBs
NCBI-GeneID:
142540404
NCBI-ProteinID:
XP_075502643
LinkDB
All DBs
Position
3:12172291..12179853
Genome browser
AA seq
807 aa
AA seq
DB search
MRFSYELTETDDRQLVSPPPLGSTPKAELQWLPLQSHPIFPTATISAASAARTPTNLMAW
DGASRLYVWDSHKKCLHWVSIRLGDPDPDSISAGFPSKVLQADVPVCFDVSKISINRNGS
ALLLAGQDGLRVMYLYGRASREENTIICRTVSIGSEIYFGSNNSIRILQISWHPFSDTHL
GVLSSDSVFRMFDLSAAIRQPEQEYYLQPGELGLSGNAAAICPVDFSFGADHLWDKFSIF
ILFSDGSTYIICPIVPFGSVYKWESLLEMHNDACTFGLKSANSKAVNNSNLAISWLESTF
PELSLQEGVGGNIFAVKAQPFVLMDASVLLQGPLRKVCHGVTENAVIQKGVCEGRAISLL
YNLVGKDSILMTAWSGGQLQLDALADEIQPVWKMGSAPRVCVDSLGQMFGAAMICELAPT
NLSILKLDQPPNDTIWLGYPPPLLRLAIVDLALPNKGGSLISMASDPLVPERIFCLHDGG
IDSIVLHFLPFTSQTSGKEKQMKTPSVYSVLSTCPGESSSPEPLHGFLTLSDSSGGSWIV
GLTCSHECVVLYMESWNELLTHAIYSERETVTLDEATDADTLTVISKELLSGPKVVLLPS
TAPNLRSVTADSIEGRSMLHQYFKLFHENYVEYAHKVYFELQHHGPHLKKIIDNQHSRIR
EVQQKLLDVEKNQEKIEDHIDSAVKLHSSLEMRLQNLRSLPGLQKKPLSKAERDFKLELD
KFTGVELDALHSSIESLNARLTRHVHYQQVDSSNRQKLIAGRRVSRIQDNELSQLKSSLE
KLSLLNSENGKKVKLVESALSSRGISK
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgaggttcagctacgagttaactgaaaccgacgaccgccaattggtttcccctccgccg
ttgggttcaactccaaaggctgagctccaatggcttccacttcaaagccaccctatcttt
ccaaccgccaccatatccgcggcctccgcggccagaacgccgacgaatcttatggcatgg
gacggagcttctcgactctacgtatgggactctcacaagaaatgtctgcactgggtctcg
attcgattgggtgatcccgacccggattccatctccgccggtttcccgtctaaggtgttg
caagcagatgtcccagtttgttttgatgtcagtaagatttccataaacagaaatggatct
gcattgcttcttgctgggcaggatggcttacgtgttatgtacctttatgggcgagcatca
agggaagagaatactatcatctgtaggactgtttctattggttcagaaatttactttgga
agcaacaattccatacgcattcttcagatttcttggcaccctttcagtgacactcacttg
ggagttctttcctcggattctgttttcagaatgtttgatttgtctgcagcaattaggcaa
ccagaacaggaatattatttgcaacctggagaacttggtctttctggaaatgcagcagca
atatgtcctgttgatttctcttttggggcggatcatttgtgggacaagttcagtattttt
atcttgtttagtgatggatccacttacatcatttgcccgattgttccttttggaagtgtg
tataaatgggaatcactattggaaatgcataacgatgcttgtacatttgggcttaaatct
gccaattcaaaagctgttaataattctaatctggcaatctcttggctggagtcaacattt
cctgaattatctctccaagaaggagttggtggaaatatattcgctgtcaaagctcagcct
tttgttttaatggatgcatctgtcttattgcagggtcctcttcgtaaagtgtgtcatggg
gtgacagaaaatgctgtaattcagaaaggagtgtgtgaagggcgtgcgatcagtcttctt
tacaatttagtcggaaaagattcaattcttatgacggcttggagtggtgggcaactacaa
ctggatgctttagctgatgaaattcagccagtctggaagatgggtagtgcaccccgtgtt
tgtgttgattcacttggtcagatgtttggtgctgctatgatttgtgaacttgctcccact
aatctctcgatcctgaagcttgatcaacctcctaatgatactatttggttgggttatcca
cctcctttactccgtctggctattgtggatttagctttgcctaataaaggtggttctcta
atttcgatggcttctgatcctctcgttccagaaagaatattttgccttcatgatggcggg
atagactcgatagtcttgcattttctccctttcactagtcaaaccagtggcaaggaaaaa
caaatgaaaaccccatctgtctattctgttcttagcacatgccctggagaatcctcctca
ccagagccccttcatggtttcttgacattgtcagattcatctggaggttcatggattgtg
ggacttacttgttctcatgaatgcgtagtgctttacatggagagctggaatgaattgctt
actcatgctatttatagtgagagggaaactgttaccctggacgaggcaacagatgcagat
actctcacagtaatcagcaaagaactccttagtgggcctaaggtagttctattaccctca
accgcaccaaatttacgctctgtgactgctgattctattgaaggacgatcaatgcttcat
cagtatttcaagctttttcatgaaaattatgtggagtatgcacacaaggtatacttcgaa
ctccagcaccatgggcctcatttgaaaaaaataattgataatcaacattctcgtatacgc
gaagtgcagcagaaacttttggatgttgaaaagaatcaggagaaaattgaggatcacata
gactctgcagttaagcttcacagttccctagaaatgcgcttacaaaacttgaggagtctg
ccaggtttacagaaaaagccattatcaaaagcagaacgagattttaaactagaacttgat
aagtttactggagtggagttggatgccttgcactcttccattgaatctttgaatgcgaga
ttgacaagacacgtacattatcagcaggttgattcctcgaatcgacaaaaactgattgca
ggaagaagggtgtctcggattcaagacaacgagttatctcaacttaaatcttcacttgaa
aaactctcgctgctaaacagtgagaacggcaaaaaggttaagcttgttgagtcggcatta
agtagcagaggaatcagcaagtga
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