Primulina tabacum: 142540474
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Entry
142540474 CDS
T11246
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ptab Primulina tabacum
Pathway
ptab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142540474
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ptab03041
]
142540474
03009 Ribosome biogenesis [BR:
ptab03009
]
142540474
Enzymes [BR:
ptab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
142540474
Spliceosome [BR:
ptab03041
]
Complex A
U1 snRNP components
U1 related factors
142540474
Complex B
142540474
Ribosome biogenesis [BR:
ptab03009
]
Eukaryotic type
Pre-60S particles
Helicases
142540474
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
RSRP
AAA_22
Motif
Other DBs
NCBI-GeneID:
142540474
NCBI-ProteinID:
XP_075502762
LinkDB
All DBs
Position
3:12725675..12732866
Genome browser
AA seq
1207 aa
AA seq
DB search
MASVEASSSTHGPRYAPDDPTLPQPWKGLIDGSTGVLYYWNPETNVTQYEKPTALPPPLP
PGPPPAAPTPKLNPIPSTRTVQSDGFQNQKHTSALMPQGQLISSSSQQHIQLTPQVSQHQ
VPPPGQVQGSHLGPGIQQQSHLAPEQIRTQIVEQPGQQVPSLLGQMPTHPGQLGISQPTP
HIPTQPGSQASYLQMQQIPHGPQGQMYSNSQMGNPHGFQFNPHQASFAVHQQNMPPQGPQ
SLQPSQHLIPGSQLPHQQDQVTGLAPRDDSKFLHGKHSGFSAVHQHMMQGQQFSHPREQK
NGIPQIDDVEYQQGKKAGFSPAQVQQTGTPSMQNLSAVASSTQASHMSTTPNQTTLYGGG
SSVNMQQTNPSLQLHQAGTDLAHSLHGSRFPNQMDPGMMHSQQQNLPPVASKMAYEENHI
GRTGNDFNYSTNKGAPAMHQLPKLAPLPMARNQQEMRMGDFPQNVTPIVPGRLNGPGPSG
GPALHGVYGNASGAPPFPNNAFPSPPLAMMGPTDPIHLSAVEIYRRKHEVTATGEDVPAP
FMTFEATGFPPEILQEMHFAGFSAPTPIQAQTWPIALLNKDIVAIAKTGSGKTLGYLIPA
FVHLRRRQNNPQNGPTVLVLSPTRELATQIQDEALKFGRSSRVSCTCLYGGAPKGLQLKE
LDRGVDIVVATPGRLNDILEMKRIDFRQISFLVLDEADRMLDMGFEPQIRKIVNEIPPRR
QTLMYTATWPKEVRKIASDLLVNPVQVNIGSVDELTANKAITQHVEVVPEMEKQRRLEQI
LRSQERGSKCIIFCSTKKLCDQLARSIGRNFGAAVIHGDKSQGERDWVLNQFRTGKTPVL
VATDVAARGLDIRDIRVVINYDFPTGIEDYVHRIGRTGRAGATGISYTFFSEQDWKHALD
LVKVLEGANQHVPPEVRDIALHGGPGFSKDRVPMNRYDSGGGGGRWDSGGRGGMRDGFGG
RGGMRDGGFGGRGGMRDGGRGGTRHDSFGGRGGMRDVGFIGRGVTRDGNFGGRGGGRDGG
PSGARLGWDRGGRGTHDRFNNLDVRGRGRGRFDSRRDGPDRSRGQSFSRSPDRVRTWGSS
RSRSSSRSRSRGRSYSRSRSRSRSWSRSRSPRSSRSWSHSPRRSRSRSYDRYERRPPRKT
KFDQVNVSPPKTEAAPSEPLRSLVSPATGGKDFTGVEPAERVPLVAAADLGNLVAEADPS
NNPPVEP
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atggcttcggtagaggcatcctccagtacacatggccccagatacgcgccagacgatcct
actctacctcaaccttggaaaggattgatagatggaagtacaggcgtcttatattactgg
aatcctgaaacaaatgtcactcaatatgaaaagccgacagctttaccaccaccgttgcca
ccagggccaccacctgcagctcctacccccaagctaaatcctataccatcaacaagaaca
gtgcaatcagatggttttcagaaccagaaacatacctcggccctgatgccacaagggcaa
cttatcagctcatcatcccagcaacacattcagctaacaccacaggtttctcaacatcaa
gtgccaccacctggtcaggtgcaggggtcacacttgggacccgggatacagcagcagagt
catctagcacctgaacaaattaggacacaaatagtggagcaaccaggtcagcaagtgcca
tccctgttggggcagatgcctacacatccaggtcagcttggaatttcgcaaccaacaccg
catatacccactcagccaggtagccaagcatcttatctacagatgcagcagatccctcat
ggtccacaaggtcaaatgtattcaaactctcaaatgggaaacccacatggtttccagttt
aaccctcaccaagcgtcattcgcagttcatcaacagaacatgcctccacagggtccacaa
agtttgcagccatctcagcatttaattccggggtcacagttacctcaccaacaagaccaa
gtgacaggacttgctccgagagatgactctaagtttcttcatggaaagcactctggtttt
tcagctgtccaccagcatatgatgcaagggcaacagttttctcatccccgagaacagaaa
aatggaattcctcaaatagatgacgtagagtatcagcaagggaagaaagctgggttttca
cctgcacaggttcagcaaacggggactccatctatgcaaaacttgtctgcagtagcaagt
tctactcaagcttcacatatgagcactacgccaaaccaaactaccctgtatggtggtggc
tcctctgtcaacatgcaacaaaccaatccttcacttcagttgcatcaagctgggacagac
ttggcacattcactgcatggttctagatttccaaatcagatggaccctgggatgatgcat
agccagcagcagaatctgcctcctgtagcctcaaagatggcctatgaagaaaaccatatt
ggaagaactggaaatgattttaactatagcactaacaagggcgcccctgcaatgcatcag
ctgcccaagcttgcacccttacccatggcaagaaatcaacaggaaatgaggatgggtgat
tttcctcaaaatgtcactcctattgtcccaggaagattgaatggtcccggtccttccgga
gggcctgctttgcatggtgtctatggtaatgcttctggagccccgccttttccaaacaat
gcttttccgagtcctcctttagcgatgatgggacctacagatcctattcatttatcagcg
gtagaaatctatcgacggaagcatgaagtaacagccacgggtgaagacgttccagctcca
ttcatgacttttgaagccactggatttccgccagaaatactacaggagatgcattttgct
ggtttctctgctcccacgcccatccaggcacaaacatggcctattgctttactgaacaag
gacatagttgctattgcgaagacagggtctggaaaaacacttggttatcttattcctgca
tttgttcatctgagacgacgacaaaacaatcctcagaatggtccaactgtgttggttttg
tctccgaccagggagctcgccacccaaattcaggatgaagcactcaagtttggtcgatca
tctagggtttcgtgcacgtgcttgtatggtggagctccaaaaggccttcaattaaaagaa
ctagatcgaggggtggatattgttgtggcaactccgggtcgactgaatgacatccttgaa
atgaagaggattgactttagacagatctcttttcttgttcttgatgaggctgatagaatg
cttgatatgggttttgagccacagattcgtaaaatcgtcaatgagatacctccaagaagg
caaactctcatgtacactgcaacctggcctaaggaagttagaaaaatagcaagtgattta
cttgttaaccccgtgcaggtcaacattggcagtgttgacgagcttactgcgaataaggct
atcacacagcatgtggaagtagtcccagaaatggagaagcaaagacgcttggagcaaatt
cttagatcccaggaacgtggttctaaatgtataattttttgttccactaaaaagttgtgt
gaccagctggcacgtagtattggacgtaactttggagcagctgtaattcacggagacaaa
tcccagggtgagagagactgggttcttaatcaatttcgaactgggaagaccccagttcta
gttgccactgatgttgctgctcgggggcttgacataagggacataagggttgtgatcaat
tatgactttccaactgggattgaggactatgtccatcgaattggaagaactgggagagct
ggtgctacaggtatttcgtacacatttttctctgagcaagactggaaacatgctcttgat
cttgttaaagttttggagggggccaaccagcatgtgcctcctgaggtgagagacatagct
ttacatggcggccctggtttcagtaaggatcgagttcccatgaaccgttatgattctggt
ggtggtggtggccgttgggattctggtggtcgcggtggcatgagagatggctttggtggt
cgtggtggaatgcgtgatggtggctttggtggtcgtggaggcatgagggatggtggccgt
ggtggaacgaggcacgacagctttggcggacgtggagggatgagagatgttggcttcatc
ggccgaggagtgactagagatggaaattttggtggtcgtggtggtgggagggatggtggt
ccttcaggtgctcggttgggatgggacaggggtggacgtggcacacatgatcgattcaac
aatttagatgtgagaggacgaggacgtgggcgatttgatagtcgaagggatggccctgac
agaagtaggggtcagagtttcagccggagccctgatagagttcgaacatggggttccagt
agaagccgaagctctagcagaagccgtagcagaggtaggagttatagcagaagccgaagc
cgaagccgaagttggtctcggagccgtagtccaaggagcagtcgcagctggagccatagc
cctagacgcagccgcagccgcagctatgatagatacgagagaaggccaccacgcaaaact
aaatttgatcaggtaaatgtttcaccaccaaaaactgaggcagcgccctctgaacccttg
agatccttggtgtctcctgctaccggtggcaaggactttactggagttgagccagcagag
cgggttcctttggtagcagctgcggatcttggcaaccttgttgctgaagctgacccttca
aacaaccctcctgtcgaaccctag
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