Primulina tabacum: 142540545
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Entry
142540545 CDS
T11246
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
ptab Primulina tabacum
Pathway
ptab03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
142540545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142540545
04121 Ubiquitin system [BR:
ptab04121
]
142540545
03036 Chromosome and associated proteins [BR:
ptab03036
]
142540545
03400 DNA repair and recombination proteins [BR:
ptab03400
]
142540545
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
142540545
Ubiquitin system [BR:
ptab04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
142540545
Chromosome and associated proteins [BR:
ptab03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
142540545
DNA repair and recombination proteins [BR:
ptab03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
142540545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT_2
BRCT
zf-C3HC4_2
zf-HC5HC2H
zf-RING_2
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
zf-RING_6
RTT107_BRCT_5
zf-RING_10
zf-HC5HC2H_2
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
142540545
NCBI-ProteinID:
XP_075502902
LinkDB
All DBs
Position
3:complement(13265361..13271611)
Genome browser
AA seq
969 aa
AA seq
DB search
MADASHLERMGRELNCPICLSLLSSAVSLSCNHVFCNSCIEKSMKSASNCPVCKVPYRRR
EIRPAPHMDNLVSVYRSMEVALGVNIFVTQTAASTKISVEDNQTGADICVIQDKGKSEDL
DCKNLDLRPRKGSKRPATSNQRDFGAAFGKPSFPTKKRIQVPLCSNTETQRQPGILEEGI
GEIYKKNHEGYSLTEKNVPVVCEKGQPVFAPFFWLREEEDIEISTQQCSQDQLFGTPADA
PCFSDIKDSDDERGNCSRADLVDSEMFDWTQRPCSPELCSTPAILQIEDNMEHTRCQEEA
GASYIDVTASVSKISAKRKKVFDNTKKSGKFVQNKSGTTNKTVHMLTETRRSKRNKKTIH
EADATYFESKKVNDESMLKSGEVGYSLDTRGISGKNKKFVCSDVIVLEVADGVPTLLNET
EPLLKRNKTGFVDSLVSRHHQQNSKLKNVEGNKIRKTSGELKKLSGRVRIQKVETSNSLK
EEAAGQGMPNKTCDESCKKTLKSSKKVKFLEGVPNDNRSITPKSLHEESTMRSQYFQENH
SNAYQHGMEIVPEISKTLATSNRIPLKKCKMLSDKIHCCFCQSSEDSEASGAMVKYYNGK
VVTDSQTARSKIIHVHKNCTEWAPNVYFEGDDVINLDAELSRSNRIRCCCCGNKGASLGC
YEKTCRKSFHVPCARLTPECRWDYENFVMLCPLHASRQLPNEEPESQTKQRRKVYYKSLS
DVHQPNITSKCENNTIIPWKLEKRLKNLVLCCSGMTNVEKGIVSEFQKLSGVMVLKNWDL
SVTHVIASTDENGVCRRTLKLLMSVLEGKWILSIEWIKACLNAKEFVHEQQYEITCDIHG
IRDGPRLGRLRLLNKQPKLFNGCQFYFMGDFAPSYKGYLHDLVISAGGKVLNRKPVGGHH
SIPHWECSGKTYIVFNQELHENCKSSEQNLILKRRFSDVEAFATSTGATAASNSWILNSI
AGHKLQNLE
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgcatcacatctagaaaggatggggagggagctcaactgccctatctgcttg
agtctcctgagttctgcggtttcgcttagctgtaatcatgtattttgcaattcatgtatc
gagaaatccatgaaatctgcatcaaattgtcctgtgtgtaaggttccatataggcgtaga
gaaattcgacctgctcctcacatggataacttggtcagtgtctataggagtatggaagtt
gccttgggggtcaacattttcgtcactcaaactgctgcttcaacaaaaatatcagtcgaa
gacaaccaaactggtgctgacatctgtgtgatccaagataaaggcaaatcggaagattta
gattgcaaaaacctggacttaaggccaagaaaaggatcaaaaaggccagcaacaagtaat
caaagagattttggcgcagcttttggaaaaccttcctttcctaccaagaaaaggatccag
gttccactttgttctaatacagagacgcaaaggcagcctggaattctggaagaaggaatt
ggtgaaatttacaaaaagaatcacgaaggatactctctaacagagaaaaatgtgccggtt
gtctgcgaaaaaggtcaacctgtatttgctccattcttctggctaagagaggaagaagat
attgagatatcaacccagcagtgtagccaggatcaactttttggcacaccggcagatgct
ccttgcttcagtgacatcaaggactcagatgacgagagaggcaactgtagtagagcagat
ttagttgacagtgagatgtttgattggacacagaggccttgctctcctgaactttgctcg
acccctgctatattgcagattgaagataatatggagcacactagatgccaagaagaggcc
ggggcttcctatattgatgtgacggcttcagtttctaagataagtgcgaagagaaaaaaa
gtttttgacaatacaaagaaaagtggaaaattcgttcaaaataaaagtggaaccactaat
aagacagtgcatatgttaactgagaccagaagaagcaagagaaataagaaaactatacat
gaagcagatgcaacttattttgagtcaaagaaagtgaacgatgaaagcatgctgaaatct
ggcgaagtaggctattccttggatactaggggaatatcaggtaaaaataaaaaatttgtc
tgctccgatgtcattgtactagaggtggcggatggagtccccactctcctaaatgagaca
gaaccgctgctaaagagaaataaaactggatttgttgattctttagtttcaagacatcac
caacaaaacagtaagttaaaaaacgtcgaaggtaacaaaattagaaagacatctggtgag
ctgaagaaattaagtggtcgagttaggattcaaaaggtggaaactagcaacagtttaaaa
gaggaagctgcaggccagggaatgccaaacaagacttgtgacgaaagttgtaaaaaaacg
ttgaaatcttcgaagaaggtgaaatttttggaaggcgtacccaatgacaatcgtagcatc
acccctaaaagtcttcatgaagaatctacaatgagaagtcaatatttccaagaaaatcat
agtaatgcctatcaacatggaatggaaatcgttccagaaatctctaaaacactggccact
tcaaataggataccattgaaaaaatgcaagatgctctctgataaaatccattgttgtttc
tgtcaatcatctgaagattctgaggcttcaggggccatggttaaatactacaatgggaaa
gtagttacagacagtcagactgcacgttcaaaaatcatacatgtgcacaaaaactgcaca
gaatgggcacctaatgtgtactttgaaggagatgatgtcatcaacctagacgctgaattg
tctagaagtaatagaattcgatgctgttgctgtggaaataaaggtgcttccctaggatgc
tatgagaagacttgccggaaaagctttcatgttccttgtgcgagactgactccagagtgt
agatgggattatgaaaactttgtcatgttatgccctcttcatgcgtcacggcaactgcca
aatgaggaacctgaatctcaaactaagcagagaagaaaagtatattacaaaagtctctct
gatgtccatcaaccaaacattacttctaaatgtgaaaataacacgattataccgtggaag
cttgagaaaaggctcaaaaacctggttctctgctgttcaggaatgaccaacgtagagaag
ggaatagtttctgaatttcaaaagctgtctggagtgatggtcctaaagaactgggaccta
agtgtcacccatgtcattgcttctacagatgagaatggggtgtgcagaagaaccctcaaa
cttttgatgagtgtgctcgagggaaaatggattttgagcatagagtggattaaagcttgc
ttgaacgccaaagaatttgtccatgagcagcagtacgagattacatgtgacattcatgga
atcagggacggccccagacttggaagattaagacttctgaacaagcaaccaaagctattt
aatggatgccaattttatttcatgggtgatttcgcgccttcgtacaaaggatatcttcac
gaccttgttatctcagctggagggaaagtactcaatagaaagcctgtcggggggcaccat
tcaatcccacattgggaatgctctggaaaaacatacatcgtattcaaccaagaacttcat
gagaactgcaaatcatctgaacaaaacttgatcctgaagcgtagatttagcgacgtagaa
gctttcgccacttcaactggagctacggccgcaagcaattcatggatcctgaactccatt
gccggccataagttgcaaaatcttgaataa
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