Primulina tabacum: 142540954
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Entry
142540954 CDS
T11246
Name
(RefSeq) cleavage stimulation factor subunit 50
KO
K14406
cleavage stimulation factor subunit 1
Organism
ptab Primulina tabacum
Pathway
ptab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
142540954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142540954
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
142540954
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
WD40
WD40_Prp19
Beta-prop_WDR3_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
WD40_WDHD1_1st
WDR55
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_TEP1_2nd
WD40_Gbeta
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_EIPR1
Beta-prop_Aladin
NBCH_WD40
WDR90_beta-prop_4th
WD40_RFWD3
Beta-prop_NWD2_C
Beta-prop_SCAP
Cytochrom_D1
Beta-prop_WDR41
Beta-prop_WDR75_1st
Beta-prop_NOL10_N
Beta-prop_DCAF4
Ge1_WD40
TPM_phosphatase
Beta-prop_VPS8
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
KNTC1_N
Motif
Other DBs
NCBI-GeneID:
142540954
NCBI-ProteinID:
XP_075503562
LinkDB
All DBs
Position
3:19043813..19049910
Genome browser
AA seq
441 aa
AA seq
DB search
MDSSGLNASGLEKTLQDGKLYRHVNELIVAHLRDNNFNQAASAVASATMTPLNVEAPLNK
LQELVAKGLAVDKDEMLSGGVSSTTLFDSSVPAGYGSIPAPRVVGVDFSAVHDTKGASKT
FPKHETRHISEHKNVARCARFSPDGRFLATGSADTSIKLFEISKVKQMMLPDTRDVPVRP
VTWTFYDHLQPINDLDFHPQNPILISGAKDRTIKFFDFSRPVARKAFRIIQDTHNVRSVS
FHPSGDFLLAGTDHPIPHLYDVNTFQCYLPATVQEIGASGAINQIRYSSTGGIYVTASKD
GAIRIWDGVTGHCIRSILNAHGTAETTSANFTKDQRYLLSSGKDSVVNLWEVGTGRLVEQ
YFGSTHTQLRCQAVFNVTEEFVLSIDEASNEIVIWDALTTERVARWPSNHIGMPRWLEHS
PVESSFVTCGTDRSLRFWKET
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggatagcagcggcctcaatgccagtggattggagaagacattgcaggacggcaagctt
taccgccatgtcaatgagctcattgttgcccatctccgtgacaacaatttcaatcaggca
gcaagtgcagttgcatcagctacaatgacaccactaaatgttgaagcacctcttaacaaa
ctccaggagttggttgccaagggtcttgcagtggataaagatgagatgctgagtgggggg
gtatcttcaactactttgtttgattcaagcgtacctgcaggatatggctcaatacctgct
cctcgagttgttggtgtagatttcagtgctgtgcatgatacaaaaggagcatcaaagacc
tttccaaagcatgaaacacggcatatttcagaacacaagaatgttgctagatgtgcaagg
tttagccctgatggaagatttcttgcaactggaagtgcagacacgtcaattaagctcttc
gagatatcaaaagtgaagcaaatgatgcttccggatacaagagatgttcccgtgcgacct
gtaacttggacattttatgatcacttacaacctatcaatgatttggatttccatcctcaa
aaccctattttgatttctggtgccaaggaccgcacaataaagttctttgatttttcaaga
ccagttgcaaggaaggcattcagaattattcaggatactcacaatgtgaggtctgtatca
tttcatccatctggagattttcttttggcaggaactgaccatccaatcccacacttgtac
gatgttaacacctttcagtgctaccttccagcaactgttcaagagattggtgccagtgga
gccataaatcagatcaggtattcgtcaacaggtggcatttatgttacagcatcaaaagat
ggtgccattcgtatttgggatggggtaactggtcattgtatccgttcgattctgaatgca
catggaacagcagaaaccaccagtgcaaatttcacgaaagatcaaaggtatcttctctca
tctggaaaggattccgttgtaaatctctgggaagttggcacgggtagattagtcgaacaa
tattttggatccactcatacacagttgcggtgccaagctgtctttaatgtaacggaagaa
tttgttctctccatcgatgaagcgagtaatgagattgttatatgggatgctcttacgact
gagagagtagctagatggccatcaaaccatattggcatgcctcgttggctcgagcattcc
cccgtagagtcatcatttgtcacatgcggaactgacaggtcattgagattctggaaagaa
acctga
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