Primulina tabacum: 142541109
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Entry
142541109 CDS
T11246
Name
(RefSeq) putative NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
ptab Primulina tabacum
Pathway
ptab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142541109
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142541109
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
142541109
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
142541109
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
142541109
NCBI-ProteinID:
XP_075503792
LinkDB
All DBs
Position
3:46219343..46228753
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AA seq
601 aa
AA seq
DB search
MPGSLGLRNTAMNNITSGGTQQAAGNLSSGRFASNNLPVAFSQISHNNAHGHSGMSSKGG
MGVAGNQGYSSTNGGGGSVPGILPSSAATGNRMAVPGFGVSPVLGNAGPHITSSVGNIAG
GGNIGRTINTGGGLSMPGFSSRINLSFNSSAGNLNVHGQSRLMGGMLQQASPQVLSMLSN
SYPTAGGSLTHNHVQAVNNLGGMSMLNDVNSNDGAPFDVNDFPQLSSRPSSSGGPQGQLG
SLRKQGLNPIAQQNQEFSIESEDFPALPGFKGGNGDYSIDLQPKDQLHDSSVSMMQPHHF
SMAHSAGYNLGAIYSPFRQQQHHAQSANGSATYMNINNQDLLHLHGSEMFPSPHPTFHSQ
SSGHPGLGLRPSNFPSSVSGTGSYDQLLQQYQQYHNPSRFFLQQMSRVDQSYRDQGNKLM
QSSLSASDPFSLLGLLKVIRMSDPDLTALSLGMDLTTLGLNLNSAENLHKTFGSPWSDEP
SKGDPEFTVPQCYYAKQPPPLSQAYFSKLQLDTLFYIFYSMPKDETQLYSANELYNRGWF
YHKEHRLWFKRVTNMEPLIKTNSYERSSFIGFDPNTWETMRKDNFVLDYEMLEKRPALPQ
H
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgccaggatcacttgggttgaggaatactgccatgaataacattacttcaggagggaca
caacaagctgcaggaaacctttctagcgggcgatttgcatcaaataatcttccagttgca
ttttctcaaatatctcacaataatgcacatggtcactcaggaatgtcttctaaaggtggt
atgggtgttgctggaaaccaaggctatagtagcactaatggaggtggtggttctgttcct
ggaattctaccgtcctctgctgctactggtaatcggatggctgtacctggttttggtgtg
tctcctgttctgggaaatgcagggccacacattacaagctcagtggggaacattgctggt
ggcggcaacattggaagaactattaacactggtggaggactatctatgcctgggttttct
tctcgcataaatttatcattcaatagtagtgctggaaatctaaatgtgcatgggcaatct
aggctgatgggtggtatgcttcaacaagcttccccacaggttttatccatgttgagcaat
tcttaccctactgccggtggctctttaactcacaatcatgttcaggctgtgaataacctt
ggtggtatgagtatgttaaatgatgtgaattccaatgatggtgccccttttgatgttaac
gatttcccccagctttctagtcgtcctagttcttctggaggtcctcaaggacaactaggg
tcattaaggaaacaaggtcttaaccctatagctcaacaaaatcaagaatttagcattgag
agtgaagattttccagctttgcctggatttaaaggtggaaatggtgattattctattgat
ttgcaaccgaaggatcaactacatgatagttctgtttctatgatgcagccacaccatttt
tctatggcacattctgctggttacaatctgggagcaatatactctccttttcggcaacaa
cagcatcatgctcaatcggcaaatggcagtgctacctacatgaatattaacaatcaagat
ctactccatttacatggttcagagatgtttccatctccccatccaaccttccattcacag
agcagtggacaccctggcctgggattgcgaccttcgaattttccaagttcagtatctggc
acagggtcatatgaccagctcttgcagcaatatcagcagtatcataatccatctcgtttt
ttccttcagcaaatgtctcgtgttgaccaatcatacagggatcaaggaaataaattaatg
caatcctcactgtctgcttccgatccattttctttgcttggtttgttaaaggtcataaga
atgagtgatcctgatttgacggctctttctcttggaatggacctaactacccttggactg
aacttgaattctgcggaaaatctccacaagacatttggctccccatggtcagatgagcct
tccaagggagatcctgaattcactgtgccacagtgttattatgctaagcaaccaccacct
ctaagtcaagcatacttctcaaagttacaattagacactttgttttatattttttatagt
atgcctaaggatgaaacccagttgtattcagcaaatgaattgtataacagaggttggttc
tatcacaaggagcaccgattatggtttaaaagggtcactaacatggagcctcttatcaag
acgaattcatacgagagaagttcttttattggctttgatccaaacacatgggagacaatg
cgcaaggataattttgttctcgattatgagatgctggaaaaaagaccagctctgcctcaa
cattga
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