Primulina tabacum: 142541184
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Entry
142541184 CDS
T11246
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC142541184
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ptab Primulina tabacum
Pathway
ptab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142541184
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142541184
03400 DNA repair and recombination proteins [BR:
ptab03400
]
142541184
Enzymes [BR:
ptab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
142541184
Messenger RNA biogenesis [BR:
ptab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
142541184
DNA repair and recombination proteins [BR:
ptab03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
142541184
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
HTH_40
RQC
Helicase_C
RecQ_Zn_bind
HRDC
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
142541184
NCBI-ProteinID:
XP_075503948
LinkDB
All DBs
Position
3:complement(50790028..50802844)
Genome browser
AA seq
932 aa
AA seq
DB search
MMQYPGLGFQRLFVSSSSTMESTLKKYFGFSKFRLYQKEIVEQILEGRDCLVVMATGSGK
SLCYQVPPLVAKKTSVVISPLISLMQDQVMALKQRGIRAEYISCVQTNPNVLRNAESGQY
DVLYLTPEKACGLTNSFWSRLLDSGICLLAVDEAHCISEWGHSFRVEYKQLDVLRDVLLN
VPVVGLTATATGKVRDDIMLSLKMHDPHITIGSFDRPNLFYSVKSIDHCSTFLDDLVKKI
SSYIDNASSTIIYCTTVKDAIQIFESLDAAGIAAGLYHGQISKKAREDSHRSFIRDEFYV
MVATIAFGMGIDKPDIRYVIHYGCPKSLESYYQESGRCGRDGIPSTCMLYYMRSDFSKAD
FYCAEARTADQRRAILESYMAAQRYCLLTTCRRNFLLEYFGEKNSPVDCGTCDNCTSSKK
ECDMSREAFLLVGCIQSCRGHWGLNLPVDVLRGSRSRRILDAKYDKLPFHGLGKELPTNW
WKALAYQLISRDYLIETFRDVYKTVRVGPKGMHFLNSCTPDYQPPLLLTLTPEMMGDEEN
KIAVSDAGVIDFCTELDLDKFSQVEDLLYRRLVEERLKYARDTGTAPYALCGDQTLRRIA
ATRPSTRARLANIDGVNQHFLTTHGDILLQTIRSLSKELSLSLDGEPHAEPLVSRKVPIK
PNNKRLTTPVRFQSWNMWQDGFTLKKIANHPDRAAPIKEQTVLEHIFEVAREGCAIDWHR
LCEEIELTHQIFKNIQDAVSKVGSEKLKPIKEELPEEVTYPQIKAVLIMQELGVSMGTIS
SVHQHNGTADDSSNGMSKHSYGSDHSCQMEGVQPNLESLIPNVNDGCSVEKSQQITPDLL
GEDSDINEAAAAHVDDLNRARKRQKLDAPREEQNIATESSILIWIDNFGDGVLLSDILGH
FNGSKEDSIINLLQHLEGEFLIFKKNNVYKVM
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaatatccaggcctaggttttcagcgactcttcgtctcttcatcatcaacaatg
gagtctactctcaagaaatattttgggttttcaaaattccgactgtaccagaaggaaatc
gtggaacaaattctcgaaggaagagattgcttagtggttatggccactggaagtggcaaa
tcactgtgttatcaggtgccaccgttggttgcaaaaaagacttctgttgtgataagtcct
cttatatctttaatgcaggaccaggtaatggcgttgaagcaaaggggtatacgtgctgag
tatatttcctgtgttcaaactaatcctaatgtgcttagaaatgccgagagtggtcaatat
gatgttctgtacctgacaccggagaaggcctgtgggctcacaaatagtttctggtcaaga
ttactggattcaggaatctgtctattggctgttgatgaagcacattgcatatcagagtgg
ggccatagtttcagggtggaatacaagcaattagatgtgttgcgtgatgttcttttaaat
gttccagttgttggattaacagctacagctactggaaaggtccgtgatgacatcatgctt
tcattgaagatgcatgatcctcatataaccattggatcgtttgaccgcccaaatctcttc
tacagtgtcaaatctattgaccactgtagtacttttttggatgatcttgtgaagaaaatc
tcttcttatatagacaatgcaagttcgacaataatttactgcacgactgtcaaagatgcc
atacagatttttgagtctcttgatgcggcgggaattgctgctggattataccatggacaa
atatctaagaaagcacgtgaggattcccacagatcattcattagagatgaattttatgtc
atggttgccacaatagcttttggtatgggtatcgacaagcctgatataagatatgtaatt
cattatggctgcccaaagagtttggaatcatactatcaggaaagtggacgatgtggcaga
gatggtattccttcaacctgcatgctgtattatatgagaagtgacttctcaaaagctgat
ttttattgtgctgaagcacgcacagctgaccaaagaagagcgatattggagtcatatatg
gctgcacaacgctattgtttgctgacaacttgcagaagaaactttttgttggaatacttt
ggcgagaaaaactctcccgttgactgtgggacttgtgataattgcactagctcaaagaaa
gaatgtgacatgtctagggaggcatttcttctggtgggctgcattcagtcgtgcaggggc
cactggggtctcaatttacctgtggatgttcttcgtgggtctcgatccaggagaattctt
gatgccaagtatgacaagcttccatttcatggccttggcaaagaattgccaactaattgg
tggaaggcactagcttatcagttaatttcacgtgattatttgatcgagaccttcagagac
gtgtacaaaactgtaagagttggaccaaagggaatgcattttttgaactcctgcacccct
gattatcaacccccattgttgctgacgttgactccagagatgatgggtgatgaggaaaac
aaaattgcagttagtgatgctggagttatcgatttttgcactgaacttgatttagataaa
ttttcccaggtagaagatctgctatatagaaggctggtggaagagagactgaagtatgca
agagacactggaactgctccatatgcattatgtggtgatcaaacattaagaagaatagca
gcgacaaggccttccacgagagctaggctagcaaatatagatggtgtaaatcagcacttt
ttgacaacacacggcgatattttactgcaaactattcgatctctatcaaaagaattgagc
ctctctttagatggggagccacatgcagaaccacttgtgtcaagaaaggttccgattaaa
cccaacaataaacgactaacgacccctgtgaggtttcaatcttggaatatgtggcaagat
ggttttacgctcaaaaaaattgctaatcacccagatagagcagctccaataaaagaacaa
actgtcttagagcatatttttgaagtggcaagagagggatgtgctattgattggcacagg
ttgtgcgaggagattgaacttacacatcagatatttaaaaacattcaggatgctgtatca
aaagtaggcagtgaaaagttaaagcctataaaagaagaattaccagaagaggtgacttac
ccccagattaaagctgtcttgattatgcaagagcttggagtatcaatgggtactatttca
tctgtccatcaacacaatggcacagcagacgattcctctaatgggatgtcaaaacattct
tatgggtccgaccattcttgccaaatggaaggggttcagcctaatcttgaatcactcatt
cctaatgtgaacgatggttgttcagttgaaaaatctcaacaaatcacccctgatcttctg
ggtgaggattcagatataaatgaagccgcagctgctcatgttgacgatttaaaccgtgct
aggaaacgccaaaaacttgatgcacctcgggaagaacagaacattgccacagagagttct
attctaatctggattgataattttggggatggagttttgctttctgatatcctgggacat
ttcaatggatcaaaagaagactcgataatcaatcttctgcagcatctggagggtgaattt
ctgatatttaagaagaacaatgtttataaagttatgtaa
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