Primulina tabacum: 142541532
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Entry
142541532 CDS
T11246
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
ptab Primulina tabacum
Pathway
ptab03015
mRNA surveillance pathway
ptab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
142541532
09123 Folding, sorting and degradation
03018 RNA degradation
142541532
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142541532
03041 Spliceosome [BR:
ptab03041
]
142541532
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
142541532
mRNA cycle factors
Stress granule specific factors
142541532
Spliceosome [BR:
ptab03041
]
Complex C
Other components
Complex C specific factors
142541532
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_10
RRM_3
RRM_7
RRM_occluded
RRM_Nup35
RRM_MARF1
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
142541532
NCBI-ProteinID:
XP_075504170
LinkDB
All DBs
Position
1:11861553..11866066
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AA seq
644 aa
AA seq
DB search
MSAPVQMQTQLQVVNAVPSGGAPFVTSLYVGDLDANVTDSQLYDLFIQMGDVVSVRVCRD
LTSRRSLGYGYVNYGNPQDAERAMEELNFTPLNGRPVRVMYSHRDPSIRRSGAGNIFIKN
LDKDIDHKGLHDTFSAFGNILSCKVVTNSSGQSMGYGFVQYAGEESAQKAIEKLNGMLLN
GKQVYVGPFLRKQEREMSVDKTIFNNVFVKNLSESTTEEDLKKTFGEFGSITSAAVMRNE
DGTSRCFGFVNFDNAEDASRAVDSLNGLKFDSKEWYVGRAQKKSERESELKHRFEQTVKE
TVDKSQGLNLYIKNLDDSISDEKLKEMFSSFGSITSCKVMRDPKGISRGSGFVAFSSPDE
ASRALSEMNGKMIASKPLYVALAQRKEDRRARLQAQFAQMRPISVMPTATPRMPMYSPGG
AGLGQQIFYGQPPPAMLPPQPGFGYQQQLVPGMRPAGPLMPNMFLPMVQQGPQGPRPGGR
RANGVPMQQVPQPVSVMQQPMLPRGRGYRYPPVRSIPDVSLQGMAGSMIPVPYEMGGMPL
RESGVSQPIPIGALASALANASPIEQRTMLGENLYPLVEQLEPEMAAKVTGMLLEMDQTE
VLHLLESPEALKAKVAEAMDVLRNVSQQQAGHSADQLASLSLND
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgcctgttcagatgcagactcaattgcaggtggtgaatgcggttccctccggc
ggggcgccgttcgtgacgtcactttacgtcggtgatctcgacgcgaacgtgacggattcg
caattgtacgatttgttcatccagatgggagatgtggtttctgttagggtttgtagggat
ttgactagccgtcgttcacttggatatggctacgtcaactacggcaaccctcaagatgct
gagagagcaatggaggagctgaatttcactcctctcaatggaaggccggttagggtaatg
tattctcatcgcgatcctagtatacgtagaagtggtgcaggaaatatctttattaagaat
ttggacaaggacatcgatcataaaggtcttcatgatacattttctgcgtttgggaacatt
ctctcttgcaaagtggttacaaattcttctggtcagtcaatgggctatggctttgtgcaa
tatgctggtgaggaatctgcccagaaagctatcgagaagctcaatggcatgctattgaat
ggaaagcaagtctatgttgggccattcctgcgcaagcaagaaagagagatgtcagtagac
aaaacaatatttaacaatgtgttcgtaaagaatttatctgaatcaacaactgaagaagat
cttaagaagacatttggcgaatttggatcaataactagtgcagcggtgatgagaaatgaa
gatggaacatcaagatgctttggatttgtgaactttgacaatgcagaggatgcttctaga
gctgttgactctcttaatggcctgaaatttgatagtaaggaatggtatgttggaagagct
cagaagaaatctgagagggaatcagaattgaaacatcgttttgagcagactgtgaaggaa
acagtagacaaatcccagggactaaacctgtatataaaaaatcttgatgatagcatcagt
gatgagaaactgaaggaaatgttctcttcatttggatcgataacatcatgcaaggtgatg
cgagatcccaaaggaataagcagagggtcaggatttgttgcattctcctcacctgacgag
gcctctagagctctttctgaaatgaatggcaagatgattgctagcaaacctctttatgtt
gcacttgctcaaaggaaggaggatagaagagcacggttgcaggctcaatttgctcaaatg
cggccaatttctgtcatgcctactgccactcctcgcatgcctatgtactctcctggtggc
gctggcttagggcagcaaatattttacggacaacctccacctgccatgctcccaccccaa
cctggatttgggtatcagcagcagcttgttcctggtatgagacctgctgggcctctcatg
ccaaatatgtttttgcctatggtccaacaagggcctcaaggtccacgtcctggtggtagg
cgtgccaacggtgttcctatgcaacaagtcccacagcctgtttctgtaatgcagcagccg
atgcttcctaggggacgcggctatcgctacccccctgtgcgtagcattcctgatgtctct
ttgcaagggatggctggaagcatgattcctgtcccttatgagatgggtggcatgccgttg
cgtgaatcaggagtgtctcagcccattccaattggcgcgctggcatctgcactcgcaaat
gcttcgcccatagaacagcggacgatgctgggtgaaaatttgtatccacttgtggaacaa
ttggagccagagatggcagccaaggtgacaggcatgctattggagatggatcagactgag
gttttgcacttgttggagtcaccagaggctcttaaggctaaggttgcggaggctatggac
gtcctgcggaatgtgtctcagcagcaggctggccactctgccgaccaattggcttctctg
tctttgaatgattga
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