Primulina tabacum: 142542235
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Entry
142542235 CDS
T11246
Name
(RefSeq) DNA topoisomerase 3-beta isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
ptab Primulina tabacum
Pathway
ptab03440
Homologous recombination
ptab03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
142542235
03460 Fanconi anemia pathway
142542235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptab03032
]
142542235
03400 DNA repair and recombination proteins [BR:
ptab03400
]
142542235
Enzymes [BR:
ptab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
142542235
DNA replication proteins [BR:
ptab03032
]
Eukaryotic type
DNA Topoisomerases
142542235
DNA repair and recombination proteins [BR:
ptab03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
142542235
FA (Fanconi anemia) pathway
142542235
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_TOP3B
Toprim
Zn_ribbon_FGT1_2
Motif
Other DBs
NCBI-GeneID:
142542235
NCBI-ProteinID:
XP_075504865
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Position
4:1486128..1496415
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AA seq
866 aa
AA seq
DB search
MAPKVLMVAEKPSIALSIASVLSGGRMSNRRGSTEVHEFDGMFLGFPVHYKVTSVIGHVF
SVDFPARYQDWNATNPLDLFDASIAKTESNPKAHICRHLSQEARGCGHLVLWLDCDREGE
NICFEVIECTGFHLKDGKKVYRARFSSVTEKDIHKAMDSLVEPNKNEALAVDARQEIDLK
VGVAFTRFQTSYFNGKYGNLDSRVISYGPCQTPTLGFCVQRHLQITTFKPEKFWALHPHI
IHKGYELKLEWERHRLFDSDITMMFQNFVKEDGILKVTDISEKQESKGRPTGLNTVNLLK
VASSALGFGPHLAMQLAERLYTQGFISYPRTESTAYPSSFDYKGTLGALVQNPVWGGYVH
HLLSEGYHKPRSGSDAGDHPPITPMASATEDMLGHDAWKLYQYICQHFLGSLSPDCKYTR
VKVQFEAGGESFHCVGQHVIAQGFTSIMPWLAVSEINIPQFSEGENIRISRIEIDEGSTQ
PPDYLSESELISLMEKNGIGTDASIPVHINNICERNYVQVQAGRRLYPTVLGISLIRGYQ
CIDPDLCLPDIRSFIEHQISLVAKGQADHSIVVEHVIEQFKRKFIYFVKQIENMDALFEA
EFSPLSDSGRVLSKCGKCLRYMKHISSQPSRLYCATCEEIYYTPQKGTIKLYKELTCPLD
NFELLIFSMPGPDGKSFPFCPYCFNNPPFEGIENIFGESKTSSAVTLGKGAGMPCFLCPH
PTCQHSMVSQGVCACPECDGTMVLDPVSAPKWRLYCNMCKCLVSLPEGAHRISTTEDQCP
ECDSTIIEVDFNKKTTPLKDGTTLHVGCILCDELLHSLVEMKHGKSFSGYGRHRGRSRGR
GRRGYRGSRGRGGKKPQDPKMSFRDF
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atggcacctaaagttctaatggtggcagagaagccgagcattgctctctcgatcgcttca
gtactttccggtggccgtatgtccaaccgaagggggagtaccgaggtgcatgagtttgat
gggatgtttttgggatttcccgtgcattataaagtgacgtcagtgattggccatgttttc
agtgtagattttccagctcgatatcaagattggaatgctacaaatcctctggatctcttc
gacgcctcaattgctaagacagaatctaacccaaaggctcacatttgtaggcatttaagc
caagaagctcgtggttgtggacatctagtgttgtggttggattgtgatcgtgaaggtgaa
aatatatgttttgaagtcattgagtgcactggattccacttgaaagatggcaaaaaagtt
tatcgtgctcggttctcatctgtcactgagaaggatattcataaagccatggatagcctc
gtcgaacctaacaagaatgaggcattggctgtggacgcccgccaagagatagatttgaaa
gttggtgtcgccttcacaagatttcagacaagctatttcaatgggaaatatggaaacctt
gattcaagagttatctcttatggaccgtgccaaactccgactcttggattttgtgtgcaa
cgacacctacaaattactacttttaagccagaaaaattttgggcgttgcatcctcacata
atacacaaaggctacgaactcaaattagaatgggagcgccacaggttatttgactcagat
attactatgatgttccagaactttgtaaaagaagatggaatattgaaagttactgatata
tcagaaaaacaggagtcaaaaggtcgtccaactggtctaaacacggtgaaccttctgaag
gttgcttcaagtgctttgggctttggacctcacctggctatgcaattggcagagcgatta
tatacacaaggttttatcagctatcctcgtacagagagcactgcatatccatcttcattt
gattacaagggcactcttggggcacttgttcagaatccagtatggggtggttacgtgcat
catcttctctctgagggttatcacaaaccacgttcaggaagtgatgcaggtgatcatccc
ccaattactccaatggcttcagctaccgaggatatgttggggcatgatgcatggaagctc
taccagtacatctgtcaacattttctcggatctctttctcccgattgcaaatacacaagg
gtaaaagttcaatttgaagctggtggagaatcattccattgtgttggacagcatgtcata
gctcaaggattcacatctatcatgccgtggttggcagtaagtgagataaatattcctcag
ttttctgaaggggagaatattcgcatttcgagaattgaaatcgacgagggaagcacgcaa
ccaccagattaccttagtgaaagtgaacttatatcgttgatggaaaaaaatggcataggg
acagatgcatccattcctgtccatatcaacaacatttgtgaacgcaattatgtacaggta
caagcaggtagaagattgtatcctactgttttaggtatcagcttaataagaggctaccaa
tgtatagatccagatctctgtttgcctgacatccgaagtttcattgagcaccagatcagc
cttgtggccaaaggtcaggcggaccattctatagttgtagagcatgtgatagagcaattc
aaaaggaagtttatttactttgtcaagcagattgaaaacatggatgcgctatttgaagcg
gaattttctcctctctcagattctgggcgtgttcttagtaaatgtggcaaatgtttgaga
tacatgaagcacatatcaagccagccatcacggctatactgtgccacatgtgaggaaatt
tattacactcctcaaaagggtacaatcaagctatacaaggaactaacctgccctctagat
aatttcgagcttttgatcttctcgatgcccggtccagacggtaaatccttccctttctgc
ccttactgtttcaacaatccgccatttgaaggcatcgaaaatatattcggtgaaagtaaa
acaagtagtgctgttacgttggggaagggagctggcatgccatgtttcctctgcccacac
cccacatgccagcattccatggtatcccaaggcgtctgtgcttgcccagaatgtgacggc
acaatggtgctggatccagtcagcgctcccaaatggaggctttattgcaatatgtgcaag
tgccttgtttcccttcctgaaggcgctcataggatctctacgactgaagaccagtgtcct
gagtgcgactcaactatcatagaggtagactttaataagaagacgacccctttaaaggat
ggaactacgttgcacgttggatgcattctttgcgatgagttgttgcattcactggtggag
atgaagcatgggaagtcgttttcagggtatgggagacacaggggacggagtaggggaaga
gggcgacgtggatatcgtggcagcagaggacgtggtgggaagaaacctcaagacccaaaa
atgagcttccgagatttttga
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