Primulina tabacum: 142542688
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Entry
142542688 CDS
T11246
Name
(RefSeq) sister chromatid cohesion protein PDS5 homolog A-like isoform X1
KO
K11267
sister chromatid cohesion protein PDS5
Organism
ptab Primulina tabacum
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ptab03036
]
142542688
03400 DNA repair and recombination proteins [BR:
ptab03400
]
142542688
Chromosome and associated proteins [BR:
ptab03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Other sister chromatid cohesion factors
142542688
DNA repair and recombination proteins [BR:
ptab03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Shu complex and associated proteins
142542688
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDS5
PTM_DIR17_Tudor
TPR_DNAAF5
DRC10_N
Rad9_Rad53_bind
DUF8449
Motif
Other DBs
NCBI-GeneID:
142542688
NCBI-ProteinID:
XP_075505571
LinkDB
All DBs
Position
4:4947216..4964213
Genome browser
AA seq
1666 aa
AA seq
DB search
MTPKQLQQQLRELGAKLENPPASKDALIKVLKQGASCLSELDQSPPKPVMESMDAFLTSI
AKPELIRHQDREVKLFVAVCICEITRITAPEAPYDDDVLKDIFELIVGTFSGLSDINGPS
FGRRVVILETLARYRSCVVMLDLDCDDLVNEMFNTFFKVTSDEHPENALTSMQTIMEVLF
EESEDVPENLLLIILSALGPNKENISSAARRLAMNVIEHCAGKLEHGIKQFLISSMSGDK
KFLNSEINYHGVLYDVYRCAPQILSGVVPYLTGELLSDQLDVRLKAVGLVGDLFTLPGST
ISESFQPVFLEFLKRMTDRVVEVRMSVLEHVKTFLLANPSRVEAPQIISALSDRLLDYDE
NVRKQVVCVVCDVACRALSSIPVETIKLVAERLRDKSILVKRYTLERLADIYRASCIDKS
SETTKNVEYDWIFGKVLRCFYDKDFRSDIVEPILSLSLFPDDFSVKDKVLNWIRIFSGFD
KVEVKALEKILEQKQRLQQEMQKYISLRQSSQVSDNELSLSDFSEGDVTELRKKVTFCFR
VMSRYFIDPAKAEENFQLLDQLKDSNIWKNLTQLLDPNTDWLQACSSRDDLLGILGPKHR
LYEFLGSLSLKCSCLLFNKDHVREILLEAGVQKSSGSNELILACMTILVILARFCPSMLA
GIEEDLVHLLEDDNEIIKEGTLHILAKAGGTIREQLGVSSRSLDLILERICIEGSRRQAK
YAVHALASITKDDGLMSLSVLYKRLVDMLEDKSHLPAVLQSLGCIAQAAMPVFETREREV
EKFIKENILECSQVAGDHANDSWDGRSELCSLKIFGVKALVKSYLPVKDPHLRSGIDDLV
LILKNILTFGEYSSDIKSSLVEMAHLKLAAAKAVLRLSKHWEHKIPVDVFYLTLRTSEDG
FPEVKRLLLNKVHQYVKDRILDPKYACAFLLDFTSQQSDLEENKRNLNDIIQMCWQSRAR
QILSQTDGLSSQYYPEYILPYVVHSLAHHPTFPNVDECKDVKEFELLYRQLYLFLSMLVH
GDGDGKSEVNISKDKESTSLLNSIFLQIKCSEDAFDSTKSKNLYALCDLGMSIIKRLASK
EIDPQNSSASVTLPPVLYKLVEKKEDGDSLVGEVKTWLAEDSVLAHFESIKLEANGIINS
EIAEDDIMKDSDSEGSEMPLGKLMKRLKAKIAKTRKEVKSESSPAEAAKGNNFDILKMVE
EINSDIGTSSKLESSNGHEYVNKKRSGQKLQKRKSMLGETTNVPVPKRRRSSSAQAHKSR
SAITSKDSKGHTDGNQEEIVNVSNKIDKELPSSSEDHSMQEKTSEPPESELLVACIKNKP
SSVSKQKSKRTYGDDEAFDKSSVDAKKPKKVTDSSSPHRTNYSKLGSVKKQKEKSVTALQ
KDNRSSMEDLIGCTIKVWWPMDKQFYEGIVKSFDTEKKKHVILYEDGDVEVLRLDKERWE
LVDNGKKVDKRSSSSKSFHPKEASSGKKSRATGSIKLEKKAEEKSPSSQIRGKRTPRKSP
KQKTLLKIKSSMGSGGSPDVTNLEFTKPSMTESDSEQEQNEKSGKILAAEKPSDKDNKQL
EDGEKGLRDAEEPKEEENDSEDTQSDRIGGSRLNADGSDHEAVSSSDMKHLDKIKEQSGQ
EDEETDTMDGPALTDEADKKSPTSLADAELSDDETLSTWKQRAGKK
NT seq
5001 nt
NT seq
+upstream
nt +downstream
nt
atgactccaaagcagctgcaacagcagctgagggagctaggtgcgaagctggaaaatcct
ccagcttctaaagacgctctcattaaggtcttgaagcaaggtgcatcatgtctttctgaa
ctagatcagtcaccaccaaagcctgtaatggagtctatggatgcttttttaacttctatt
gccaagccagaacttataaggcatcaagatcgagaggttaagttatttgttgctgtatgt
atctgtgaaataactcgcattactgcaccagaggctccttatgatgatgatgttctaaag
gatatttttgagttgattgtgggtactttcagtggcttaagtgatataaatggcccatca
tttggaaggagagtagtaattcttgaaacattggcaagatatagatcctgtgtcgtgatg
ctggatcttgactgtgatgatcttgtaaatgaaatgttcaatactttcttcaaagttact
agtgatgagcatcctgagaatgctttgacttcaatgcagacaattatggaggttctcttt
gaagaaagtgaggatgtgcccgagaaccttttacttattatactgtctgctttaggcccg
aacaaggagaacataagctcagccgcgaggaggcttgctatgaatgtcatagagcattgt
gcgggaaaattggaacatggcataaagcagtttcttatttcatcaatgtctggcgacaag
aagttcctgaattctgagattaattatcatggagtactctatgatgtttaccgttgtgct
cctcaaatcttatctggagttgttccttatcttactggagagcttctgagtgatcaactg
gacgttcgtttgaaagcagtgggattagtgggcgacctctttactctgccaggatctact
atttctgagtcgttccagcctgtgtttttggagtttttgaaaaggatgactgatagagtg
gtggaggttagaatgtctgtccttgagcatgtcaagacttttcttctcgcaaatccttca
cgagtcgaagctcctcaaataatatctgcactcagtgatcgattgttggattatgatgaa
aatgttcgtaaacaagttgtctgtgttgtttgtgatgtggcatgtcgtgccctatcatct
attcctgttgaaactatcaagctggtagcagaacgccttcgagataaatctattctggta
aaaagatatactctagagaggttagctgacatctacagagcatcttgcattgacaagtcc
agtgagacaactaagaatgttgagtatgattggatttttgggaaagtattgagatgcttt
tatgataaagattttaggtcagatatagttgaaccgatcctatctctttccttgttccca
gatgacttttccgttaaagataaggtgttaaattggataaggatcttctctggatttgac
aaagttgaggttaaggctcttgagaagattttggaacagaaacaaagattgcagcaagag
atgcagaagtacatatcccttagacagtcgtcccaggtttccgataatgagttatcctta
tctgatttctcggaaggtgatgtgacggagcttcgaaaaaaggtcacgttctgtttccgt
gttatgtcccgctatttcatcgatccagcaaaggcagaggagaattttcagcttctcgac
caattaaaagattccaacatatggaaaaatttgacacagcttcttgatccgaacactgac
tggcttcaagcctgtagttcacgggatgatttactgggcatccttggcccaaagcatcgg
ctttacgaatttctgggcagtctttctttgaaatgttcgtgtttacttttcaacaaggat
catgttagagaaatccttctggaggctggtgtacaaaaatcgtctgggagtaatgagttg
attttggcctgcatgacgatactagtgattcttgcacgtttttgcccttcaatgcttgct
ggaatagaagaagatttggtacatcttctcgaggatgacaatgaaataataaaggaaggt
actttgcatattcttgcaaaggctgggggaactatccgtgaacagctgggagtttcgtct
aggtcattagaccttattctcgagcgcatatgcattgagggtagccgaaggcaggccaaa
tatgctgtccatgccctggcatcgataacaaaagatgatgggcttatgtcactttctgtt
ctttacaagaggctggttgatatgcttgaagataagtcgcatttacctgctgtactccag
tctcttgggtgcatagctcaagctgctatgccagtgtttgaaacaagagaaagggaagtt
gaaaagttcattaaggaaaacatcctggagtgcagccaagtagcaggagaccatgcaaat
gattcttgggatggtagaagtgaactttgttccttaaagatttttggggttaaagctttg
gtcaagagctatttgcccgtcaaagatcctcaccttcgttctggtattgatgaccttgtt
ctaatcctcaagaatatacttacatttggtgaatactcaagcgatattaaatcaagtttg
gttgagatggcgcatctgaagcttgctgcggcaaaagctgtgcttcgcctgtcaaaacac
tgggagcataaaattcctgttgatgtcttttatctgacgttgagaacatcggaggatggt
tttcctgaggtaaagagactacttctcaacaaggttcatcaatatgtgaaagacagaatt
ttagatcccaagtatgcatgtgccttcctgcttgattttacttcccagcagtctgatttg
gaagagaacaaacgcaatttgaatgatatcattcagatgtgttggcaaagcagagcacgc
caaattctctcacagactgatggattatcttcacaatattatccagaatacattcttcca
tatgtggtccattcccttgctcatcatcctacgtttcctaatgttgatgaatgcaaagat
gtcaaagaatttgaacttttgtacaggcagctatatttgttcctgtctatgctggtgcat
ggagatggagatggtaagtctgaagtcaatatcagcaaggacaaggagagcacttcattg
ttgaattcaatttttctacaaatcaagtgctctgaggatgcttttgattcaactaaatcc
aagaacttgtatgctttgtgcgatctcggaatgtcaattatcaagaggttagcttcaaaa
gaaatagatcctcaaaactcaagtgcttcagtgaccctacctcccgttctttataaattg
gtcgagaagaaagaagatggtgactcactggttggtgaagtgaagacttggttggctgag
gacagtgtattggctcactttgaatcaatcaaactggaagctaatggaattattaactca
gaaattgctgaggatgatatcatgaaggacagtgacagtgagggcagtgaaatgccattg
ggcaagttgatgaaacgtctgaaggccaaaatagcgaagacgagaaaagaggtgaagagc
gagtcttcacctgctgaagcagcaaaagggaataattttgatatcctgaagatggttgag
gaaataaattctgatattggtacaagtagcaagttggaatcaagcaatggacatgaatat
gttaacaaaaagagaagcggccaaaagcttcaaaagaggaaatcaatgttaggtgaaaca
actaatgttcctgtccctaaacgtcggagatcatcatctgctcaagctcacaagtcacgt
tcagcaatcacttcaaaagattccaaggggcatactgatggaaatcaggaagagattgtt
aatgtctcaaacaaaattgataaggaacttccaagtagctcagaagatcattctatgcaa
gaaaaaacttctgaacctccagaatcagagttgttagttgcttgtataaaaaataaacca
agttctgtgtcaaagcagaaaagtaaacgaacctacggagatgacgaggcatttgataaa
tccagtgttgatgcaaaaaagcctaagaaagtcacagattcttctagcccacaccgaact
aattattccaagctgggatcagtgaaaaagcaaaaagaaaaaagtgtcacagcattacaa
aaggacaaccgaagttccatggaggatttaattggttgcacaataaaagtttggtggcca
atggataagcagttttacgaaggtattgtaaaatcttttgatacggagaaaaagaaacac
gtgattttatacgaggatggagatgtggaagttcttagattagacaaagaacgttgggaa
cttgttgataatggcaaaaaagttgacaagcgatctagttcatcaaaaagctttcatcct
aaagaagcatcatctgggaagaaaagcagagctacaggaagcataaaactggagaagaag
gctgaagaaaaatctccatcatctcagatcagagggaaaagaactccacgcaaaagtcca
aagcaaaagactttgttaaagatcaaatcttctatgggaagtggggggagcccagatgtt
acaaatcttgaatttaccaaaccgtccatgactgaatcagattcagagcaggagcagaat
gaaaaatctggtaagattttagccgcggagaagccgtctgacaaggacaataaacaactg
gaagatggtgagaagggtttacgtgatgcagaagagcccaaagaggaagaaaatgattct
gaagacactcagagtgatcgtattggtggatctcgactcaatgctgatggatctgatcat
gaagcagtttcttcttcagacatgaagcatctagataagatcaaagaacaatctggacaa
gaagatgaagaaacggacaccatggatggccctgcactcacagatgaagctgacaagaaa
tcacctacttctcttgctgatgccgagctttctgatgatgagactctgagtacgtggaaa
cagcgtgctggaaaaaaataa
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