Primulina tabacum: 142542873
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Entry
142542873 CDS
T11246
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ptab Primulina tabacum
Pathway
ptab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142542873
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142542873
03036 Chromosome and associated proteins [BR:
ptab03036
]
142542873
Enzymes [BR:
ptab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
142542873
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
142542873
mRNA degradation factors
5'-3' decay
Decapping complex
142542873
Chromosome and associated proteins [BR:
ptab03036
]
Eukaryotic type
Gene silencing
piRNA pathway
142542873
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
142542873
NCBI-ProteinID:
XP_075505868
LinkDB
All DBs
Position
4:7043185..7047956
Genome browser
AA seq
487 aa
AA seq
DB search
MNHNNTRGWYPPGIGNGRGGGALNPNPVFQNRNPHYSQLQPPYPQRTGYNQQPQQWMRRN
HGVSTVPYSSDEIEKTVQGEAIGSTSRDWKAQLMIPPPDTRYKTEDVTATKGNEFEDYFL
KRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPVLEKIDPDNN
VIQAVLLVPTRELALQTSQVCKELGKHLEIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPG
RIVDLSNKGICILKDCLMLVMDEADKLLSPEFQPSIERLINFLPRNRQILMYSATFPVTV
KDFKDRYLHKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSV
NRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVN
VVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFKLYRIEQDLGTEIKQIPPFI
DQAVYCQ
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgaatcacaataacacgcgaggatggtatccacctgggatcggcaatggccgtggtggc
ggagccttaaacccgaaccctgtttttcagaacaggaacccgcattactcgcagctgcag
ccaccataccctcaacgaacgggttataatcagcagccgcagcagtggatgaggcgaaac
catggtgtctcgactgttccttattcttctgatgaaatcgaaaaaactgttcagggtgaa
gccatcggttccacttcacgagattggaaggctcaattgatgattccgccacctgatacc
cggtataagactgaggatgtaactgcaacaaaaggaaacgagtttgaggattactttctg
aaacgtgaactgttgatgggaatatacgagaaggggttcgagaggccttctcccatccag
gaagagagtatccctattgctcttactggtagcgacatccttgcccgtgctaaaaatggt
actgggaaaactgctgcattctgcattcccgtattagaaaaaattgatccggataacaat
gtcattcaagctgttctattagtaccaactagagaattagcacttcagacatctcaagtc
tgtaaggaactgggaaagcacttggaaattcaagtgatggtgaccacaggaggaaccagt
ctgaaggatgatatcatgaggttgtatcaacctgtccatttactggttggaactcctgga
aggatagttgatctcagcaataaagggatatgcattctgaaagattgtttaatgcttgtt
atggatgaggcggataagcttttgtctcctgaatttcaaccttccatagagcggctgata
aattttcttcctcggaatcggcaaattttgatgtattcagcaacattcccggtgaccgtg
aaagattttaaagacagatatttgcataaaccttatgtcattaatttaatggacgaactc
acactcaaaggtattacccagtattatgctttcgtagaagaaagacagaaagttcattgc
ctgaatacacttttttctaagctgcaaattaaccagtcaataatcttttgcaattctgtg
aatcgagtggagttgctagcgaagaaaatcactgagttgggttattcttgcttctatatt
catgctaagatgctgcaagatcatcgtaacagggtatttcatgacttccgaaatggtgct
tgcaggaatcttgtttgcactgatttgtttacgagaggaatagatatacaagctgtcaac
gttgtcatcaattttgatttccctaagaattcagaaacttatctgcacagggtgggtcgc
tcggggagatttgggcatctcggattggctgtcaatttgatcacttatgaagaccgcttc
aaattgtacaggattgagcaggatcttggtacagaaataaaacaaattcccccttttatt
gatcaagctgtctactgtcagtga
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