Primulina tabacum: 142542954
Help
Entry
142542954 CDS
T11246
Name
(RefSeq) LOW QUALITY PROTEIN: replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
ptab Primulina tabacum
Pathway
ptab03030
DNA replication
ptab03420
Nucleotide excision repair
ptab03430
Mismatch repair
ptab03440
Homologous recombination
ptab03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
142542954
03420 Nucleotide excision repair
142542954
03430 Mismatch repair
142542954
03440 Homologous recombination
142542954
03460 Fanconi anemia pathway
142542954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ptab03000
]
142542954
03032 DNA replication proteins [BR:
ptab03032
]
142542954
03400 DNA repair and recombination proteins [BR:
ptab03400
]
142542954
Transcription factors [BR:
ptab03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
142542954
DNA replication proteins [BR:
ptab03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
142542954
DNA repair and recombination proteins [BR:
ptab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
142542954
MMR (mismatch excision repair)
142542954
DSBR (double strand breaks repair)
HR (homologous recombination)
142542954
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
zf-CCHC
zf-CCHC_3
DUF223
DUF936
NGO_1070-like
CDC24_OB3
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
142542954
NCBI-ProteinID:
XP_075506005
LinkDB
All DBs
Position
4:complement(8040681..8044379)
Genome browser
AA seq
860 aa
AA seq
DB search
MPPINLTEGAIALLSSGEAQGTDVKPVLQVADIRLVNTQNQNNNNERYRILLSDGTFTQQ
GMLATQRNELVRSEKLQKGSIVQLTQFVCNLIQNRMIIIIIDLDVILEKCDPIGEPKQYP
NKNDGNAPSIARPTAQIQPTNQPVSGTGAQFYASGSASKPNVGSEIHAPPVMEGRNAVSH
SYNSSSSNLDSSRYGSMNAPQQYAKSESGSGISRAPNNYVRPPQSLHHQPPPMFSNRGPV
AKNEAPPRIIPIAALNPYQGRWTIKARVTAKGELKHYSNLRGDGKVFAFDLLDSEGGEIR
VTCFNAVADQFYHQIEPGRVYMISKGSLKPAQKTFNHLRNDHEIFLESTSIIQPCFEDDK
TIPQQQFHFLPICDMEGLDNNSVVDLIAVVCSISPSTLIMRKNGQETQKRTLQLKDMSGR
SVELTLWGNFCNAEGQTLQNMCDSGVFPVLAVKSGRVNDFNGKSVGTISASQLFIEPDFV
EAHNLRTWFDNEGKNTTAVSISRETNFVRTDTRKTVTQIKDEKLGTSEKPDWITVSATLT
FMKVDNFCYTACPIMIGDRQCNKKVTNNGDGKWRCDRCDQLVDECDYRYILQMQIQDHTG
LTWVTAFQETGEEILGVSAKDLYYLKYEEQDDEKFSELVRNVLFTKFTFKLKVKEETFSD
EQRVKSTVVKADKVNFQTETKYLLDSIAKFKEEDLGSLPLKSEKPISASGQNHGGGFGSG
SKESRASTMNYSGGNINVARDTPSQMGMYVNQYSGSRLPPTSSVGMCMSCNSCGASGHSS
GNCPSVMSGPGQQSYGGSFGNKLTPGASSGGASGECFKCHQFGHWAKDCPNSSNVPPAYG
TSNATPGRYGTASKQYVGGF
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atgccgccgattaatttgacggaaggcgcaattgcgctgctatcgagtggcgaagcgcag
gggactgacgtaaaacccgtgcttcaagttgccgacatacgtttggtgaatacacagaac
cagaacaataacaatgaacggtatcgtatcttgttgtcggacggaacgttcactcagcaa
ggcatgctcgcgactcagcggaacgaattggtacggtctgaaaagctgcagaaaggttcc
attgtgcagttgacgcagttcgtttgtaatcttattcagaatcgcatgattataatcatt
attgatctggacgtgatactagaaaaatgtgaccctattggtgaaccaaagcaatatcca
aacaaaaatgacggaaatgcgccttcaattgctagaccgacagcacagattcagccaaca
aatcagccagtttctggaactggtgcacaattttatgcatccggttcagcttcaaagcca
aatgtgggcagtgaaattcatgctcctcctgtgatggaaggccggaatgcagtctcacac
tcatataattcttccagcagcaatcttgactctagcagatatggttcaatgaatgcacct
cagcagtatgcgaaatcagaatctggttctgggatttctcgggctcctaacaattatgtc
aggccgcctcagtcacttcatcatcaaccgcctccaatgttctccaacagggggcctgtc
gctaaaaatgaagctcctcctagaattattcctattgctgcactgaatccttaccaagga
agatggacgattaaggccagagtgacagccaaaggggaactcaagcactacagcaatctt
cgaggtgatggtaaagtatttgcttttgatcttcttgattctgaaggaggagaaataaga
gtgacatgcttcaatgctgtagcagatcagttttaccatcaaattgagcctggtagagtt
tatatgatttctaaaggttcgctgaagcctgctcagaaaacttttaatcacctacgcaat
gatcatgagatttttctggagagtacttcaattattcagccttgctttgaggatgataaa
accatcccacagcagcaatttcattttctccccatatgtgacatggaaggcctagacaac
aacagtgtagtggatttgattgctgttgtttgttctatcagtccatccaccttaataatg
agaaaaaatggtcaagaaactcagaaaagaacactccaactcaaagacatgtcaggcaga
agtgttgaattaactttgtggggaaacttttgcaatgccgaaggtcaaacacttcagaac
atgtgcgactctggggtatttcctgttttggctgtgaaatctggtagagtgaatgatttt
aatggaaaatcagtgggaaccatttccgctagtcagctgtttatagagccagattttgtt
gaagctcacaacctcagaacatggttcgacaacgagggaaaaaataccactgctgtatct
atatccagggaaacaaattttgtccggactgatacacggaaaactgtaactcagattaaa
gatgaaaaattagggacttccgagaagcctgattggattacagtctctgccaccctcacg
ttcatgaaagtggacaacttttgctatactgcatgccccatcatgatcggggatcgtcag
tgcaacaaaaaggttacaaataacggagatgggaaatggagatgcgacagatgtgatcag
ttagttgatgaatgcgattatagatatattctccagatgcaaatccaggatcacactgga
ttaacatgggtgactgcatttcaggaaacaggagaggagatattgggcgtatcagcaaaa
gacctgtattatttgaaatacgaagaacaagatgatgagaaattttccgaacttgtacgt
aatgttctgtttaccaaattcacattcaagttaaaagtcaaggaagagacatttagtgat
gaacagcgtgtcaagtcgacagtagtcaaagcagataaggtgaacttccaaacagagacc
aaatatcttctagactccattgccaagttcaaagaagaggacttgggttctttacctctt
aaaagtgaaaaacccatttcagcatctgggcagaatcacggtggaggatttggtagtgga
agcaaagaatcgagagcatctactatgaactacagtggaggtaacatcaatgtggccaga
gacacaccgagtcagatgggcatgtacgttaatcagtatagtggttcacgacttccccct
actagttctgttggtatgtgtatgagttgtaatagctgtggtgctagtggtcatagctct
ggaaattgtcctagtgttatgagtggtccagggcaacaatcttatggaggcagctttggc
aataagttaaccccaggggcgagttctgggggtgcatccggtgagtgctttaaatgccat
caatttggacactgggctaaggattgtcccaattcaagcaatgttcctccagcttatggt
accagtaatgcaactcctgggagatatggtacggcatcaaagcaatatgttggcgggttt
tga
DBGET
integrated database retrieval system
