Primulina tabacum: 142543212
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Entry
142543212 CDS
T11246
Name
(RefSeq) LOW QUALITY PROTEIN: poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ptab Primulina tabacum
Pathway
ptab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142543212
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142543212
Enzymes [BR:
ptab01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
142543212
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
142543212
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
142543212
NCBI-ProteinID:
XP_075506435
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All DBs
Position
4:34274190..34280840
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AA seq
618 aa
AA seq
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MQYKSSLSNAFQTADRRRLLSRQWPIKQVTKANFAEALAEIKTLIFNSDYVAVSLQRTGS
YSSPWQKILPIDTEEIAYLKAKRSAERYQILQFAVCPFSVKDSKLVAHPFNFHLFPRDEL
KIGMPSYGFSCQSSHLTSMAREGFDFNTCFYNGISYLSRAQESAAIVRMGNLRSIDNGAK
SSPVLSVADSXFSERIKSRVKNWRNVCKDSNRTDDALINSLRKVIAGSEKYGSRPCLSID
VCSERQVLLVLEMLKGFADVVPLRAPVKGGDMQVLRVILTCSEEDKNLLEEELRNMEEEQ
NRGIRGFREVIDLISTSQKPVVAHNSLNDFASIYSKFLAPLPLTMNEFCGSLLLVFPLIL
DTNHLLTKCKPFEKSGNLSGSISYLKKRFSAPIDMEIPDQESGNVNVQGHYVLKLCQLFV
ALHSILKIIPEVHESDNSPLSPSVQRHANNFGPVSDDYGDSSAEDIRIWTSSSRRVSTDN
LVFLLGFEAGATAGKVKRILHDSHDVFSKEFDVRMVDRTCAVVVFWTPGFAEQFLKIMGS
GELLLGKLREMISEGLRAVDYDTYRRACKSVQWETDLAECLDEASGDKETPLSAAKSRQE
QQSVIYWNSDEMINLDEL
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgcaatacaaaagctccctctctaatgcttttcaaaccgccgaccggcgccgcctcctc
agccgccaatggcccatcaagcaagtcacaaaggccaacttcgcagaagctttggcagaa
atcaaaacccttatattcaattccgattatgtggcggtgtctttgcagagaaccggcagt
tactcctccccatggcaaaaaatcctccccatcgatacggaggagatagcgtatctgaag
gccaagcgctccgccgagcggtatcagattctccagttcgcggtctgccctttctctgtc
aaagattccaagctcgtcgcgcatccgtttaacttccatttatttcccagggatgagttg
aaaattgggatgccgtcttacggtttttcttgtcaatcctcacatttaacttctatggca
cgagaaggatttgattttaatacttgcttttataacggtatatcatacttatccagagcg
caagaatctgctgccattgttcgaatggggaatttaagatcaattgacaatggagcgaaa
tcttctccagttctttctgttgctgattctngtttctcagaaaggatcaaatctcgagta
aagaactggagaaatgtttgcaaagattctaatagaactgatgatgctttgatcaattcc
ttgagaaaagttatagctggaagtgagaagtatggctccagaccatgtttgagcatagat
gtctgcagtgaacgtcaagtgctacttgtattagagatgttgaaggggtttgctgatgta
gtgccgttacgagctccagtgaaagggggggacatgcaagttcttcgagtcattttgact
tgttcagaggaagacaagaaccttcttgaggaggaacttcggaacatggaagaggagcaa
aataggggtatccgtggctttcgagaagtgatagacctgatttctacttctcagaaacct
gttgttgcgcacaactcacttaatgactttgcatccatatattcaaagtttctagcccca
cttcctttgacaatgaatgaattctgcggttccttgcttctggtcttccctctcatcctt
gataccaaccatcttttgacaaaatgtaaaccttttgagaagtcgggcaacttatccgga
tcaatttcttatttgaaaaaaaggttttccgcaccgatagatatggaaattcccgatcaa
gagtctggcaatgtcaatgttcaggggcattatgttctgaaattatgccagttgtttgtg
gcgttgcattcaatcttgaaaataattcccgaagttcatgaatctgataacagtcctttg
tctccttccgttcaacgtcatgccaataattttggtcctgtttcggatgattacggagat
tctagtgccgaagatatcagaatctggactagcagtagtagaagagttagcacagacaat
ttagtatttttgttgggattcgaagctggtgctactgctgggaaggttaaaagaattctg
catgattcacatgatgttttttctaaagaatttgatgttcgcatggtggataggacatgt
gctgtagtcgttttctggactcctggttttgcagaacagtttctgaaaatcatgggttct
ggagaacttttattaggtaaactgagagagatgatttcagaaggtcttcgagctgtagac
tatgacacgtacagaagagcttgcaagtctgttcagtgggaaactgatttagcggagtgc
ttagacgaagcctcaggagacaaagaaacacccctttctgcagccaagtcacggcaggag
cagcaatcggtaatatattggaacagtgatgaaatgattaacctggacgagctttaa
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