Primulina tabacum: 142545099
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Entry
142545099 CDS
T11246
Name
(RefSeq) putative NOT transcription complex subunit VIP2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
ptab Primulina tabacum
Pathway
ptab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142545099
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142545099
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
142545099
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
142545099
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
142545099
NCBI-ProteinID:
XP_075508187
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All DBs
Position
5:1901617..1914524
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AA seq
530 aa
AA seq
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MWRPETSNKSNSNRVDTNGTTFMTPYSTSFGSSSVVSNESGGNNSEGLHNSTHECRYLPG
SYASRSSTNNVGLPSGVQQAQGSLSSVRNTPYFLTNEPSQLCFGGSHGHSSVTNTGGPPL
IPTRPPFFPSKPPLVPNKGHTARISNNIGGFVSGDGSSSSSTGLAVVPSPAFGFNSSAPC
MVPIHGNSHIGAPMPLPQNQFQDVPGHYFSYMGLLNDSNVDAAANVDVNGLCHLSGYYSS
VGDPQSQPGGLNIGNFVDYGATQHQKEHLVQLQQHSMGRSPDFVFDAGAINSHDHPLQQN
HVSSITGTGFSFPPPGNQDLHFHGSGQYQHVQQSQPHFYNILRRKEVNPRQGSRLGPDDY
GLLGLLKIIKGVNPAKTALAMGVDPHSLGLELNSPEPLHQKFTSPWSDEHVKEGPKYHIP
DCYISIQPPPLQRSHFKKFHLPMLFYVFYSMPNDQAQLLAANELHDRGWYYHRELRMWFT
PVENSAPSVKNATYEVGCYVCFDPTTWQTVRQDNVVLHYNMIEERPAIPQ
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgtggagaccagagacgtcaaacaagtctaattcaaatcgtgtagataccaatggaaca
acttttatgactccttattctacttcatttggttcctccagtgttgtttcgaatgagtct
ggtggaaacaatagtgaagggctccacaacagtactcacgagtgtaggtatctgcctgga
tcatatgcatcgagaagttcaacaaataatgtcggtcttccaagcggtgtccaacaagct
caagggagtttgtcgagtgtgagaaatacaccatattttttaaccaatgaaccttcccag
ctatgttttggaggttcacatgggcattcgagcgtcacaaatactggggggccgcctttg
attccaactaggccacctttttttccaagtaagccacctttggttccaaataagggacat
acagcgcgaatttccaataatattggtggttttgttagtggagacggtagcagttcaagt
tctactgggttggctgttgtccctagtcctgcttttggctttaactcgtcagctccttgt
atggtccccattcatggaaattctcatatcggggcgcccatgccacttccacaaaaccaa
tttcaagacgtgcccggtcattattttagttatatgggattgctaaatgactcaaatgtc
gatgctgctgctaacgttgatgtcaatggcttatgccacctatccggatactattcttct
gttggtgatcctcaaagtcaaccaggtggtctgaacatcgggaatttcgttgattatggc
gcaacacagcaccagaaagaacatttagtgcaacttcaacaacattcaatgggaagatct
ccggattttgtgtttgatgccggtgccataaactcacatgatcatcctttgcaacaaaac
cacgtttcttcaataaccggaactgggttttcttttccaccgccaggcaatcaagatctt
cattttcatggttcagggcaatatcagcatgtccagcaatctcaacctcacttctataat
atcttaagacgcaaagaagttaatcctcggcaaggctctcgacttggacctgatgactat
ggcttgcttggtttgttaaaaatcataaaaggcgtcaatccggctaaaaccgctcttgct
atgggagttgatccgcactccctcggcctggaattgaattctccagaacctctacaccaa
aaatttacatctccatggtctgacgaacatgtcaaagaaggaccgaagtatcatattcct
gactgctacatttctatacagcctcctccattgcagcgaagtcacttcaagaagttccat
ctaccgatgttattttacgtgttttacagtatgccaaacgaccaggcgcagctcttagcg
gcaaatgaactacatgatagagggtggtactaccacagagagctccgcatgtggttcact
ccggtagagaactcagccccttccgtaaagaatgctacgtatgaagtaggttgctacgta
tgtttcgaccctactacatggcagactgtaagacaggataacgtcgtactgcattacaac
atgatcgaggaaaggccggcaatcccacagtag
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