Primulina tabacum: 142545587
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Entry
142545587 CDS
T11246
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
ptab Primulina tabacum
Pathway
ptab03022
Basal transcription factors
ptab03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
142545587
09124 Replication and repair
03420 Nucleotide excision repair
142545587
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptab03021
]
142545587
03036 Chromosome and associated proteins [BR:
ptab03036
]
142545587
03400 DNA repair and recombination proteins [BR:
ptab03400
]
142545587
Enzymes [BR:
ptab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
142545587
Transcription machinery [BR:
ptab03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
142545587
Chromosome and associated proteins [BR:
ptab03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
142545587
DNA repair and recombination proteins [BR:
ptab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
142545587
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
SNF2-rel_dom
C5orf58
nSTAND3
Motif
Other DBs
NCBI-GeneID:
142545587
NCBI-ProteinID:
XP_075508966
LinkDB
All DBs
Position
1:48679912..48686358
Genome browser
AA seq
760 aa
AA seq
DB search
MKFQIEDVTVYFPYDNIYPEQYEYMIELKRVLDAKGHCLLEMPTGTGKTIALLSLITSYS
LSKPSSSLKLIYCTRTVHEMEKTLAELKFLYKYQVQMLGPSAGILALGLSSRKNLCVNPN
VLSAENRDSVDAACRKLTASWVRAMAIENRNVPTCGFYENYEKVASNVVLPPGVYTLQDL
RAFGKEKGWCPYFLARYMVRSANVVVYSYQYLLDPKVAGIISKEMQRESVVVFDEAHNID
NVCIEALSVSVRRQTLEGATRNINRMSQEVERLKATDAGRLRAEYNRLVEGLAQKGNLPI
SDAWFTNPTLPEDILKEAVPGNIRRAEHFLSVLRRLVQYFKGRLEAENVEKEGPVTFVAS
INTQVGIDQKMLRFCYDRLHSLLLTLEITDTDEFLHIQSICDLATLVGTYTRGFSIIIEP
FDERMPHIPDPVLQLCCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFDPKVSRS
FTMSLTRDCICPMVLTRGSDQLPVSTKYDLRSDPGVEKNYGKLLLEMVSVVPDGVVCFFV
SYSYMDGIVNSWHESGILKEIMQHKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVA
RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSRVLLARLEYLRETFQIKEGDFLTFDALRQA
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMAVHIAREF
LKRMAQPYDKTGAIGKKTLMSQEDLEKMPSNGGGVGGMFR
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagttccaaatcgaagatgtgacggtctacttcccctacgacaacatttaccctgaa
cagtacgaatacatgatcgaactcaaacgcgttctcgatgccaagggccattgcctcctg
gaaatgcctacaggaaccggaaaaaccatagccctcctatctctaatcactagttactct
ttatcaaaaccctcgagttctctaaagctcatatactgcacccgcactgtgcacgagatg
gagaaaaccctggcagaattgaaattcttgtacaagtatcaggttcagatgttgggtcct
tcagcagggattcttgctctagggctttcttcgaggaagaatttgtgtgttaatccgaat
gtgttgtcggcagagaatcgagattcggtggatgctgcttgtaggaagttgacggcaagt
tgggtgagagcaatggccatcgagaatcggaatgtaccgacctgtgggttttatgagaac
tatgagaaggttgcctctaatgtggttttgcctccaggggtttatacgctacaggatttg
agggcatttgggaaagaaaaagggtggtgtccgtactttttagcacgttatatggtgcgg
tcagctaatgtggtggtttatagctaccagtaccttcttgatcccaaggttgcgggaata
atatcaaaggagatgcagagagagtctgttgtggtgtttgacgaggctcacaatattgac
aatgtgtgcattgaggctcttagtgtcagtgtaaggagacagacacttgaaggggcaact
aggaatattaatagaatgtctcaggaggttgaaaggttaaaggccaccgatgctggtcga
ttgcgtgcagaatacaaccgtcttgttgagggtttggcacaaaaggggaaccttcctatt
tctgatgcctggttcacaaatccaaccttgcctgaggatatactaaaagaagccgttcct
ggaaatataaggcgtgccgagcatttcttatctgttttacgcagattagtccaatatttc
aaagggagactggaagcagaaaatgtagaaaaggaaggaccggtgacatttgttgcttct
atcaatacacaagttggaatcgaccagaaaatgctacggttttgctatgatcggcttcac
tcgcttttgttaacattggagataacagacacggatgagtttttacatatccaatcaatt
tgtgatttggcaacacttgttgggacctacactcgaggattttctattatcattgaacca
tttgatgaaagaatgccacatattcctgaccctgtccttcagctctgttgccatgatgct
tctcttgcaataaagcctgtatttgaaagatttcaatcagttgtaattacatctgggaca
ctcagccccattgatctgtaccctcgccttttaaattttgatcccaaggttagtcgaagc
tttacaatgtccttaacgagggattgcatatgcccgatggtcctcacacgtgggagtgat
cagcttcctgtgagcacaaaatatgatttgagaagtgaccctggggtggaaaaaaattat
gggaagcttttgctggagatggtatctgttgttccggatggagtagtgtgtttctttgtc
agctactcttatatggatgggattgttaatagttggcatgaatctggaattctgaaggag
ataatgcagcataaacttgtgttcattgagacacaggatgtagttgaaactacattggca
ttggacaattaccgaagagcttgtgactgcgggagaggtgctgtttttttctctgttgcc
aggggaaaagtggctgaaggtatagactttgataggcattatggcagacttgtaatcatg
tttggtgttccttttcaatacacattgagcagagtattgcttgcaagattggaatatttg
cgggagactttccagataaaagagggcgattttttaacatttgatgctttgagacaagct
gctcaatgtgtgggccgagttattcgatccaaggcagattatggtatgatgatctttgcc
gacaaaagatatagccgtcatgacaagcgctcaaaattacctggttggattctctcccat
ttacgggatgctcacctgaacttgagtactgacatggctgtgcatatagcaagagagttc
ttgaagaggatggctcagccatacgataagactggtgcaattggtaagaaaaccctcatg
tcacaagaagacttggagaaaatgccgtccaatggaggcggagttggaggaatgtttaga
tga
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