Primulina tabacum: 142545795
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Entry
142545795 CDS
T11246
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
ptab Primulina tabacum
Pathway
ptab04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
142545795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ptab04121
]
142545795
Ubiquitin system [BR:
ptab04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
142545795
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Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
F-box-like
DUF7885
LRR_NXF1-5
F-box
LRR_8
Motif
Other DBs
NCBI-GeneID:
142545795
NCBI-ProteinID:
XP_075509299
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Position
1:49166888..49170637
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AA seq
581 aa
AA seq
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MAYSFPEEVLEHVFSFLSSDKDRNAVSLVCKSWYELERWCRRRIFVGNCYAVAPEFVIRR
FPEVRALEMKGKPHFADFNLVPEGWGAYLDPWISAMSVAYPFLEEIKLKRMVVTDDSLEL
ISKSFKNFKVLVLSSCEGFTTDGLASIAANCRNLRELDLRESEVEDLNGHWLSRFPDNYT
SLVSLNMSCLHSEVNLSTLERLVARSPNLKTLRLNRAVPLEKLPNLLRRAPQLVDLGTGV
YSADIRSDTFSNLTEAFSTCKRLEGLSGLWDVVQAYLPAMYSVCSGITSMNLSYATIQSS
DLVKLVGQCRNLQRLWVLDYIEDSGLEAVAESCKDLQELRVFPSDPFGGEPNVSLTERGL
VSVSEGCPKLQSVLYFCRQMSNTALIAIARNRPKMIRFRLCIIEPRARDYITLEPLDTGF
GAIVEKCKDLRRLSLSGLLTDRVFDYIGTHAKKLEMLSIAFAGDSDLGLHHVLSGCESLR
KLEIRDCPFGDKALLANAAKLETMRSLWMSSCSVSYGACKLLGQKMPMLNVEVIDESGPP
DSRPDSWPVEKLYIYRTVAGRRLDMPDYIWKMDEDKELEYS
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atggcgtactcgtttccggaggaggttctggaacatgttttctccttcctcagctccgac
aaggatcggaacgctgtttccttggtgtgcaagtcttggtacgagttagagcggtggtgc
cgccgccgtatcttcgtggggaactgctacgccgtcgcgccggagttcgtgatccggagg
tttcctgaggtcagggcgttggagatgaaggggaagccgcatttcgccgacttcaacctg
gtgccggagggttggggggcgtatctggacccgtggatctcggcgatgtcagtggcgtac
ccttttctcgaggagatcaagctcaagcgcatggtggtgacggacgatagcttggagctg
atctcgaagtcgtttaagaatttcaaagtgttggtgctctcgtcttgcgagggttttaca
actgacggtctcgcgtcgattgctgctaattgcaggaatcttcgagaacttgacttgagg
gaaagtgaagtggaggatttaaatgggcattggcttagtcgtttccctgacaactatacc
tcactggtgtcgctgaacatgtcttgcttacactctgaggtgaatttgtccaccttggaa
cgactggttgctcgttctcctaatctgaagacgcttcggctcaatcgtgctgttcctctc
gagaagctccctaatctacttcgccgtgcacctcagttggttgacttgggtacaggtgtt
tattccgctgacatccggtccgacacattctctaacttgacagaagcattttccacttgt
aagcggcttgaaggcttgtcaggtctttgggatgtggttcaagcttatcttccagccatg
tattccgtctgctccggtatcacatcaatgaatttaagttatgcaaccattcaaagttcc
gatctagtcaaacttgttggccagtgtcgaaatttacagcggctatgggttctggattac
attgaagacagtggtcttgaagctgttgcagagtcttgcaaggatctgcaggaacttcgg
gtgtttccttcagatccttttggaggagaaccaaatgtatctctcactgaacgggggctt
gtttctgtctcagagggctgccccaaacttcaatctgttctttacttctgccgtcagatg
tcaaatactgctttgattgctatagcaaggaatcggcccaagatgatccgcttccgactg
tgtatcatcgagcctcgggctcgtgattacataaccctcgaaccacttgatactggtttt
ggagccatcgttgagaagtgcaaggatttacggcgcctttccttgtctggtctcctcact
gatcgagtattcgactatattgggacacatgctaagaaactggagatgctttccatagct
tttgcaggggatagtgacttgggcctgcatcatgtattgtccgggtgtgaaagtctccgg
aaactggagatcagagactgtccatttggggacaaggctcttttggccaatgctgcaaag
ctggagacaatgcgatccctttggatgtcttcttgctcagttagttatggagcgtgtaag
ctgcttggtcaaaagatgcctatgctcaatgtcgaagttatcgatgaaagtgggcctccg
gattcgagacctgatagctggcctgttgagaaactctacatttaccggacagttgcagga
cgaagactcgatatgcccgattacatctggaaaatggatgaagacaaggaactggaatat
tcttaa
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