Primulina tabacum: 142546295
Help
Entry
142546295 CDS
T11246
Name
(RefSeq) putative pectate lyase 12
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ptab Primulina tabacum
Pathway
ptab00040
Pentose and glucuronate interconversions
ptab01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
142546295
Enzymes [BR:
ptab01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
142546295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
DUF5123
Motif
Other DBs
NCBI-GeneID:
142546295
NCBI-ProteinID:
XP_075510052
LinkDB
All DBs
Position
5:complement(9450248..9453249)
Genome browser
AA seq
474 aa
AA seq
DB search
MLTSNGCIVFMMLVVGLFSHQVSAFRNFTLPGQHPDPEAIARHVHRKVNISLSRRQMLSY
STNEKSSTCLTGNPTDDCWRCNINWQQNRQKLADCAIGFGQYALGGKGGRYYVVTDSSDN
DPVNPKPGTIRHAVIQTEPLWIVFSANMLIHLSEELIFNSYKTVDGRGAKVQITGGGCIT
LQYISNVIIHNIHIHDCYQAGETNIRSSPTHYGWRSQSDGDGISIFGSRDIWIDHCTLSN
CKDGLIDAVMGSTGITISNNIFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRM
PRCRRGYIHVVNNDFTRWEMYAIGGSGNPTINSQGNRYIASSDSNVKEVTKRVDTPEDEW
RDWNWRSEGDIMVNGAFFVASGQGVEVKYEKAYSIEPRSATDIDLLTLNAGVLSSRGNNL
GKWASESDGSASGADSDTQAGVFEDYGDYSRSNKLKSYDSILIIFLIILCFCGN
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgttgaccagcaatggctgcattgtgttcatgatgttggttgtgggcttattttctcac
caggtttcagcatttcgcaacttcacgctccccggtcagcaccccgaccccgaagccatt
gctcgtcatgtccacagaaaagtgaatatctcactttcaagaaggcaaatgctatcctat
tccaccaatgaaaaatcatccacttgtctgaccggaaatcccacagacgactgctggcgg
tgcaacatcaactggcaacagaaccgccagaaattagctgattgtgccattggattcggc
caatatgccctcggtggcaagggtggacgttactacgttgtcacggattcatcagacaac
gaccctgtaaatccaaaaccaggcacaattcgacacgctgtgatccaaactgagccttta
tggatcgtattttcagctaacatgctcatccatctgtccgaggaattgatcttcaactca
tataaaactgtagatggccgaggggcgaaggtgcaaataaccggtgggggatgtataact
ttacaatatataagcaatgtgataatccacaacattcatattcatgactgctaccaagca
ggagagacgaatataaggtcgagccccacccattatgggtggcgtagccaatccgacggt
gatggaatctcgatatttggatctagggacatttggattgatcattgtaccttgtcgaat
tgtaaggatgggttgatagatgctgtgatggggtcgacggggattactatatctaacaac
attttttctcatcataacgaggtgatgctactcggccatagcgacgactacttacctgat
tcaggaatgcaggtgaccattgcttttaaccattttggagagaaacttgtacagagaatg
ccaagatgtagaagagggtacatacatgtggtgaacaatgacttcactaggtgggaaatg
tatgccattggagggagtgggaatcctaccatcaatagccaaggaaatcgctatatcgcc
tcgtctgatagcaatgtgaaggaggtgacgaaacgggtggatacaccggaggacgaatgg
agggactggaattggaggagtgagggggacataatggtgaatggagcattctttgtggca
tctggacagggtgtggaggtgaaatacgagaaagcttatagcattgagcctagatctgct
acagatattgacttgctcacactcaatgctggtgtacttagcagcaggggaaataatctg
ggcaagtgggcatctgaatccgacggttctgcttctggagccgattcggatacacaagca
ggcgttttcgaggactatggtgattattcaaggagcaacaagctgaaatcttacgactcg
attctaataatttttttaataatactttgtttttgtggcaattaa
DBGET
integrated database retrieval system
