Primulina tabacum: 142546306
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Entry
142546306 CDS
T11246
Name
(RefSeq) polyadenylate-binding protein 7
KO
K13126
polyadenylate-binding protein
Organism
ptab Primulina tabacum
Pathway
ptab03015
mRNA surveillance pathway
ptab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
142546306
09123 Folding, sorting and degradation
03018 RNA degradation
142546306
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142546306
03041 Spliceosome [BR:
ptab03041
]
142546306
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
142546306
mRNA cycle factors
Stress granule specific factors
142546306
Spliceosome [BR:
ptab03041
]
Complex C
Other components
Complex C specific factors
142546306
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_3
RBD_DEAH11
RRM_occluded
Nup35_RRM_2
RRM_5
HOATZ-like
DacZ_P
Motif
Other DBs
NCBI-GeneID:
142546306
NCBI-ProteinID:
XP_075510066
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All DBs
Position
5:9541421..9546760
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AA seq
622 aa
AA seq
DB search
MAVAPTLSATPVSLYVGDLHPDVTDGILFDAFSEFKSLASVRVCRDSSTGRSLCYGYVNF
IAPQDANRAVEVKNHSMLNGKVVRVMWSHRDSDARRSGIGNVFVKNLSESMDCIKIKEMF
QKFGNVLSCKVVTSDDGKSKGYGFVQMESENDANSAIEALNDSIIGGKQMYVGKFIKKAD
RAIPSHEAKYTNLYIKNLDTDVSEDVIKDKFSEYGKIVSVAVSKDESGASKGFGFANFEN
PDDAKRAVEALNGSQLGSKVIYVARAQKKSERAEMLRRQFEEKRKEQILKYQGSNVYVKN
IDDDVSDDELREHFSHCGTITSAKLMRDDKGLSKGFGFVCFSTPEEANKAVNSFHGLMLH
RKPLYVAPAQRKEERQAQLQLQYAQRMAGLTGPSAVIHRAYAPFYYPAPGVVSQISAGSG
LMYQPLGIRSGWRANTRSNPSRPVVPPSTVPMVPNNPRYLRQNRGRMNGHTMPLVGGQTF
AAHYVTSPKDSSNQQRTTTGISHEANKGSPHVQPLLTATGPNVVGSDMLSSLLAAAPPEQ
QKQMLGERLYPLVGQHKPALAAKITGMLLEMDNSEILLLLESPESLAAKVEEAVEVLELS
KTKMSNQDAMHPNYLAAEVAVN
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atggcggttgcaccgaccctatcggcaacgccggtttctctgtacgtcggggatttgcat
ccagatgtgacggacggtattctgttcgatgccttctcggagttcaagagcctcgcatcg
gttcgggtctgcagagactcatcaactggtcgctccctctgttatggttacgtcaacttc
atcgctcctcaagacgccaatcgtgctgttgaggtgaaaaatcactccatgttgaatggg
aaggtggtgagagtcatgtggtcacatcgtgattcagatgcaagaagaagtgggattgga
aatgtctttgtcaagaatttgagtgaatcaatggattgcataaagattaaagaaatgttt
cagaagtttggtaatgttttgtcctgtaaagttgtcacatctgatgatggaaagagcaaa
ggatatggatttgttcagatggaatctgaaaatgatgcaaattccgccatcgaggcactc
aatgactccataattggtgggaaacagatgtatgtaggtaagtttattaagaaggctgac
cgagctatccctagtcatgaagccaagtatacaaatctgtacatcaagaatttggataca
gatgtctcagaagatgtcatcaaggacaagttctctgaatatggaaaaattgtaagcgtt
gccgtttcaaaagatgagagtggggcatcaaaaggttttggattcgccaactttgagaat
ccggatgatgctaaacgtgcagtggaagctttaaatggatcacaacttgggtcaaaagtg
atatatgttgctcgggcacaaaaaaaatcagaacgggctgaaatgttgcgccgtcagttc
gaggagaaacggaaggagcaaatcctgaaataccagggttccaatgtgtacgtgaagaat
attgatgatgacgttagtgatgatgagctgagggaacattttagtcactgcggaacaatt
acttcagcgaagcttatgcgagatgataaagggttgagcaagggatttggatttgtttgc
ttctctacaccagaggaggctaataaagctgtgaactcatttcatgggcttatgttgcat
cgcaagccattatacgttgcacctgctcagagaaaagaggaaagacaagcacagttacaa
ctacaatatgcccaacgtatggcagggttaacaggaccatctgcagttattcatcgtgca
tatgctccattttattatccagctcctggtgttgtctcacaaatttcagcaggttctggt
ctgatgtatcagcctctgggcattaggtcagggtggagagctaacactcggtcaaaccct
tctagacctgttgttccaccatctacagttcccatggttcctaataatccaagatatctg
agacaaaacagagggaggatgaacgggcatacgatgccattagttggtggacagacgttt
gcagctcattatgtgacttcacccaaagattcaagcaatcagcagcgtactacaactgga
atttcacatgaggcgaacaaggggtcacctcatgttcagcctcttctaactgctactgga
cccaatgtggtggggtcggatatgctaagcagtttgcttgctgcagctcctccagaacag
cagaagcagatgcttggagaacgcctttacccacttgttggtcagcataagcctgcctta
gctgcaaaaataactggaatgcttttggagatggacaactcagaaatactacttttattg
gaatcaccagaatcgctggcggctaaggtggaagaggcagtcgaggtgcttgaactctca
aagaccaaaatgtcaaatcaagatgcaatgcacccaaattatcttgctgctgaagttgcc
gtaaactga
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