Primulina tabacum: 142546488
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Entry
142546488 CDS
T11246
Name
(RefSeq) uncharacterized protein LOC142546488 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
ptab Primulina tabacum
Pathway
ptab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142546488
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142546488
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
142546488
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
142546488
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
MsrA_helical
Motif
Other DBs
NCBI-GeneID:
142546488
NCBI-ProteinID:
XP_075510344
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Position
5:complement(11095914..11105575)
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AA seq
866 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVGELESQIDSFEAEVEGLSVKKGKSRPPRLTHLETSISRHKA
HIMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQENFDEFSDVDELYNSLPLDKVES
LEDLVTVGPSNLVKGVGASGTVLSLKSSLAATPSPALTTLSSTPQVASAPDQVEETASQD
SNSDAVARTPPPKSNNLSSSAPQTPPAASHGTLGVATASSLLTESSATKEEDISNFSGGK
LSPALSETGLRPISRGGLPSQPSSTIALSASSTISNNGSLSAMPLASEIGKLNILVSDDR
SASTGMTPSIASPLSNRVILPQASKASDGLGASDLVIAGDSAIMGSRVFTAPVVPGMQWR
PGSSFQNQNETGQFRGRTEIAPDQREKFLQRFQQVQQQGQTNILGMTSLTGGKQYSAQQQ
NPLLTQFNAQSSSLSPQLGLGIGIQGSVLNGVASSASQQPQSAIHQSVNQQIMIPTTSRE
AESGLAKAEELLQQQPITEDSSVDSATNPGLGKSLVQEDEIKASHTLDTSAAVSIAEPSQ
VTRDIDLSPGQPLQPSASTGSLGVIGRRSVSDLGAIGDNITSSTANSGGMHDQLYNLQML
EGAFHRLPQPKDSERAKSYTPKHPAVTPPSYPQVQAPIVNNPAFWERLGSDTYGTDTLFF
SFYYQQNTYQQYLAARELKKQSWRYHRKYNTWFQRHEEPKVATDDFEQGTYVYFDFHIAN
EEQHGWCQRIKTDFSFEYNYLEDELN
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atgggagctagtcggaagttacagggagagatagatcgcgttctgaagaaagttcaggag
ggcgtcgatgtatttgatagcatttggaataaggtttatgatactgataatgcaaatcag
aaggaaaaatttgaggctgacttgaagaaggagataaagaagttgcagcgatacagagat
cagatcaagacttggatacaatcaagcgaaataaaggataagaaggttagtgcctcttat
gagcaagctctagtggacgctcgcaagcttattgagcgtgagatggaacgatttaaaatt
tgtgagaaagaaactaagacaaaagcattctccaaagaaggattgggccaacaacccaaa
acggatccgaaagaaaaggctaaatcagagaccagggattggttgaataatgtggttggt
gaactggaaagtcaaatagatagctttgaagcggaagtagagggactttctgttaagaaa
gggaagtcaaggcctcccagactgacacatctagagacatccatttctcggcataaggct
catattatgaagttagaattgattctaaggctattggacaatgacgaattgagtccagaa
caagtcaatgatgtaaaggatttcctggatgactatgtggaaagaaatcaggagaacttt
gacgaatttagtgatgtcgatgaactttacaattccttgcctttggacaaggtggaatct
cttgaagatctagtgacagttggtccttctaatcttgtgaagggtgtcggtgcctctggt
acggttttaagtttgaaatcttctttggctgcaacaccctctccagctctgacaacatta
tcttccacaccacaggttgcttccgctccagaccaagtggaagaaacagcttctcaagac
agtaattcagatgcagttgcaagaaccccacctcctaagagtaataatcttagttcttct
gcaccacaaacaccaccagcggcaagccatggtactctaggtgttgccactgcttcatca
ttattaactgagtcaagtgccaccaaagaagaggatatcagtaacttctctggtggcaaa
ttatctcctgctctatccgaaactggattaaggcccatcagtagaggcggtcttcctagt
caaccatcttccacaattgctcttagtgctagcagtacgatttctaacaacggatccctt
agtgccatgccgttggcttcagaaattggaaaattaaatattttggtatctgatgaccga
tcagcaagtactggaatgacaccgtccattgcatctcctctaagtaatagagtaatcttg
ccacaagcttccaaggcaagtgatggacttggcgcaagcgatttagtaattgccggtgat
tccgcaataatgggtagcagagttttcaccgcccctgtggttcctggtatgcaatggagg
cctggaagttcctttcaaaaccaaaatgaaacggggcagtttcgtggacgaactgagatt
gctcctgaccaaagggagaagtttctacaaagatttcagcaggtgcagcaacagggccag
actaacattctcggtatgacctctcttactggagggaaacaatactctgcccagcagcaa
aatccgctcttgacgcagtttaatgctcaaagctcatctctctcgcctcaactgggattg
ggaattggaatccaaggttccgtactcaatggtgttgcatcatctgcttcacagcagcca
cagagcgcaatccaccaatcagttaatcagcagatcatgatacccacaacatctagggag
gctgaaagtggtcttgcaaaagctgaggagttactgcagcaacagcccataactgaagat
tcatcagtggattctgctaccaatcctggacttggaaagagtcttgtgcaagaggatgaa
attaaggcttcccacaccttggatacctcagctgctgtctcaattgctgaaccttcccag
gtgacgagggatattgacctatctccagggcagccgttgcaacccagtgcatctactgga
agtcttggtgtgattggtcgacgaagtgtatctgatcttggtgccattggtgataatata
acttcatcaactgcaaattctggagggatgcatgatcaattgtataatttgcagatgctt
gagggtgctttccataggcttcctcaacccaaagactctgagcgtgcgaagagctatact
ccaaaacatcctgctgttaccccaccgagctatcctcaagttcaagcaccaatagttaat
aatcctgccttctgggaacggcttggatctgatacttatggcactgatactctctttttt
tcattttactaccagcagaacacttaccaacaatatttggcggccagagaattgaaaaaa
caatcttggagataccacagaaaatataacacatggttccaacgacatgaagagccaaaa
gtcgccaccgatgattttgaacaggggacatatgtgtactttgatttccatatagccaat
gaggaacagcacggatggtgtcagagaattaagactgatttctcttttgagtacaattat
ctcgaagatgaactaaactaa
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