Primulina tabacum: 142546692
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Entry
142546692 CDS
T11246
Name
(RefSeq) LOW QUALITY PROTEIN: sister chromatid cohesion protein SCC2-like
KO
K06672
cohesin loading factor subunit SCC2
Organism
ptab Primulina tabacum
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ptab03036
]
142546692
Chromosome and associated proteins [BR:
ptab03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
142546692
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
PDS5
Cnd1
C1_1
IFRD
C1_2
PHD
DUF7020
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
142546692
NCBI-ProteinID:
XP_075510658
LinkDB
All DBs
Position
5:complement(12647437..12673775)
Genome browser
AA seq
1785 aa
AA seq
DB search
MWNSGSGDLPCGISLSNTVHSEVAPCLPLPSLPVFCGALDQELRLFDDERSRWSSNQGDV
AGKIVDLLRNTDVSYLNLKDQSSIQPGASIGNSNLFNEVLRHDPDAFGCVAPGSIEEPMH
RSGLTESTPFERNMPVHSQLLRETGEMRRGADQVQADSVGTSKHQQDHYVDKKVLNSSRK
PKVKQKGKDGFLPGTCPDSRDYQDTAIADFCEMLEELCGRAEVFGEDRDEVELIPLPFAD
LKALTNQILSMRAKKILHMVHVDLLSKILKVLDHQIHRAEGLSINYNYHLDADVVSTIYC
SLESIHGALAIMTHDDMPKQLYKEENIERILDFSRHQILDVMFACDPAYRAMHKPTDIGA
IDDEEDEEAADFGSASKKRRTSKSVKEKKSTTNKGLSVVNTVTQKLCTILSFLKQFLSIE
RFSDSCILQLVRTSLQTLLVDNIPLLQLKAISLIGGIYYMYTQHRSYVMDETVQIILKSP
LSKRVPRAYHLPDEEQRQIQLVTALFIQMVQYSANLPEVVRSENPLVEVSVDPGYPSKCY
EAITESCCLFWTRILQRLASTKSQDASELKMIMENLVMDLLTTLNLPEYPASAAILEVLC
VLLLQNAGLKSKDITARIMAIDLLGTIAARLKHDAVLCRNDKFWILQEFINSEIVDPSYE
EDACSVCKGAISERSVYVCQGCQRRFHVDCMEGMENEVHYRNSDCQICLCERQLLVLKTY
CVSQDKDDQKKNRNQSKKSSRHDTVTIQDIVQQMLLNYLQDVRSEDDTHLFARWFYLCLW
YKDDHPASEQKIYYYLTRIKSRAIVRESSSFSSSLTRDSVKKLALALGQNSSFARGFDKI
LQVLLASLRDNSPTIRSKAMRAVSIIVEADPEVLGDKFVHLAVEGRFCDSAISVRESALE
LVGRHIASHPDVGLKYFEKVAERIKDTGISVRKRAIKIIKDMCTSDTGFSLFSAACFEII
SRINDEESSVQDLVCKTFFEFWFEEHSGMQTHSFKDGSCVPLEVAKKTEQIVEMLRRMSS
HKPLVTVIKRNLSLDFFPQSAKAAGINPVLLASVRRRCELMCKCLLEKVLQVSEVSSEEG
EELMLPYALLLHAFCLADPTLCVPTSDPSQFVVTLQPYLKSQSDNRVTAQLLESIIFLID
SVLPLLRKLPQTVCDELEQDLKQMIVRHSFLTVVHACIKCLCSVGKVAGKGASVVEYLIQ
LFYKRLDALGFNNKQQVGRSLFCLGLLIRYSSSLLATSSSNTRMVDVTSSVNLFKKYLQA
EDFIIKVRSLQALGYVLIARPEFMLQKDVGKILEATLSSDTDDRLKMQSLQNMYEYLLHA
ESQLESDKASKNEVGHSIDGVQSVPVAAGAGDTNICGGIVQLYWDNILGRCLDVNEQVRQ
AALKIVEVVLRQGLVHPITCVPYLIALETDPQEVNSKLAHHLLMNMNEKYPAFFESRLGD
GLQLSFMFIHSMNDAMAEISNHKVHHSVKGRSDAGTSAYARLGVSRIYKLIRTNRVSRNR
FMSSVVRKFEMPRWNNYVIPFLMYCTEILALLPFTAPDEPLYLIYTINRLVQVRAGILES
NMKDFLHSVEGIYPKGNGNGIVQSDQTIQYVSERSMYIDGNHKISEEFPGRHLSGDPQSK
NSDNLEDSYCMPKIDLQKIQADCLASGAIQLLLKLKRHLKIVFGLDDARCQAYSPNEPPK
PGESLLRQNILFNISDVNIDPPNTSEDFLRRYQDFKNALKEDTVDYSTYTANIKKKRPPP
RRGGKASRMADAEDDDDYEDENWTNGVNRINRSGRKGGVRTRQRC
NT seq
5358 nt
NT seq
+upstream
nt +downstream
nt
atgtggaattccggaagtggtgatctcccctgtggaataagcctctccaatacagtccac
tccgaagtggcgccgtgcttgccgttgccctcgcttcctgtgttctgcggggcactggat
caggaactccgcctgtttgatgacgaaaggtccaggtggtcgtctaatcaaggtgatgtt
gctggaaagattgttgatctcctccggaacactgatgttagttacctgaatctcaaagac
caatcaagcattcaaccaggtgcctctattgggaactctaaccttttcaatgaagttttg
aggcatgatcctgatgcatttgggtgtgttgccccaggttctatcgaggagccaatgcat
agaagtggtttaactgaatcaactccctttgagcggaacatgcctgtgcacagtcagttg
ctgagagagactggtgaaatgaggagaggtgctgaccaagttcaggcagactctgttgga
actagcaaacaccagcaagaccattatgttgacaaaaaagttttaaattcttctagaaag
ccaaaagtgaaacagaaaggaaaagatggttttttacctgggacttgtcctgattcccgt
gactatcaagacacagctattgccgacttttgtgaaatgttggaggaattatgtggcaga
gcagaagtttttggcgaggatcgagatgaagtagaattgataccattgccctttgctgat
ctaaaggcacttacgaatcaaattctgtccatgcgagccaaaaaaattctccatatggtg
catgtagatcttctttcaaagatattgaaggtcttagatcaccagattcaccgagcagaa
ggactgtcaataaattataattatcatctggatgctgacgttgtatcaaccatttattgc
tctctcgagtcaatccatggagctttagctattatgactcatgatgatatgcctaaacag
ctttacaaagaagagaatattgaaagaatcctggatttctcaaggcatcaaattttggat
gttatgtttgcttgtgatccagcataccgtgctatgcataagccaactgatatcggagcc
attgatgatgaagaagatgaagaagcagctgattttggttcagctagtaaaaaaagacga
acctcgaagagtgtaaaagaaaagaaatccacaacaaacaaggggctttctgtcgtgaat
actgtaactcagaagttgtgcactattcttagttttctaaaacagtttctgtcaatagag
cgcttttccgatagttgcattctccagctcgtgagaactagtttgcagacacttttggtt
gataacatcccacttttgcagctgaaagcaatcagtttaattggtgggatatattacatg
tatactcaacatagatcttatgtgatggatgaaactgttcaaatcattctaaagtcacca
ctctctaagcgagtaccaagagcctatcatcttcccgatgaagagcagagacaaattcag
ttagtcacagctctgttcattcaaatggttcagtatagtgccaatcttcctgaagttgtt
aggtccgaaaatccattagtggaggtttcagttgaccctggatacccttccaaatgctac
gaggcaattacggaatcttgctgcctcttttggactcgaattcttcagagacttgccagc
acaaaaagtcaggatgcatctgagctgaagatgataatggaaaatcttgtcatggattta
ctcactactctgaacttaccagagtatcctgcctcagctgctattctagaggttctttgc
gtgttactacttcaaaatgctgggctgaaatctaaagatattacagctcggataatggcc
attgacctactgggtacaattgctgcaaggttgaagcacgatgctgtcctgtgcaggaat
gacaaattttggatcttgcaggagttcattaatagtgaaattgtcgatccaagttatgaa
gaggatgcatgctctgtttgtaagggtgcaataagtgaaaggtctgtatacgtgtgtcaa
ggttgtcagagaagatttcatgttgattgtatggaaggaatggagaatgaagttcattat
cgaaactcagattgccagatctgtctgtgcgagagacaacttcttgtcttgaaaacatac
tgtgtgtcccaggacaaggacgaccaaaaaaagaatcgaaatcagtcgaaaaagtcttct
agacatgacactgtgacaatacaggatattgttcaacaaatgcttctcaattatctgcag
gatgtgcggtccgaagatgacacacacctctttgcacgatggttttatctttgcctatgg
tataaggatgaccaccctgcgtccgaacaaaaaatctactactacctcactaggataaaa
tcaagagcaattgtgcgcgagtcttcttcattttcatcctccctgacacgggattcagtt
aaaaagttagctttggcattaggacaaaatagttctttcgccagagggtttgacaagatt
cttcaagtgctcctggcaagtctaagggacaactcacccacgattcgttctaaagcaatg
cgagcggttagtatcattgtagaagctgatccagaggttttgggtgataagtttgtccac
ttggctgttgagggaaggttttgtgactctgccatatctgtcagagaatctgctcttgag
cttgttggtcgccatattgcatcacatcctgatgttggtctaaagtattttgagaaggta
gcggagagaatcaaggatacagggattagtgtgcgaaaacgtgctatcaaaatcatcaag
gatatgtgtacctctgatactggattttcactattttccgctgcttgctttgaaataata
tctcgcataaatgatgaagaatccagcgtacaggaccttgtctgcaagacttttttcgaa
ttttggtttgaggagcattcaggcatgcagacccattcatttaaagatggaagttgtgtc
ccattggaagtggctaagaagacggaacaaattgtagagatgctaagaaggatgtctagt
cataaaccacttgttactgttattaaaagaaacttatcccttgatttctttccacaatca
gccaaagctgctggaataaatcccgtattacttgcttcagtacgtagacgctgtgagttg
atgtgcaagtgtttgttggaaaaagtattgcaggttagtgaagtaagtagtgaggaagga
gaagagctcatgctaccatatgctttactattgcatgccttctgtttggcggatcctact
ctatgcgtgccaacttctgatccttctcagtttgtggtcaccctacaaccatatctgaaa
agtcagtccgacaatcgggtgactgcccagctattggagagcataatatttttaatcgat
tctgtcttgcctttgttgcgcaagcttcctcaaactgtttgcgatgaacttgaacaagat
ctaaagcaaatgattgttcgacattctttcctgacagttgtccatgcttgcatcaagtgc
ttgtgctccgtgggaaaggtagcaggaaaaggggcaagtgtggttgaatatcttattcag
ttgttctataaacgcctggatgccttgggatttaataacaagcagcaagtaggtcggtct
cttttttgcttggggttgttaatacgctatagtagttctctgttggctacatcttcttcc
aacacaaggatggtggatgtcacaagcagtgttaacttgtttaaaaagtatcttcaggct
gaagatttcatcattaaggtccgctcgttacaggccttaggatatgttttaattgctcgg
cctgaatttatgttgcaaaaggatgttggtaaaatcttggaggctacactttcctctgat
actgatgatcgtctgaagatgcaatcattacagaacatgtatgaataccttctgcatgcg
gaaagtcaactggaatctgataaagctagtaaaaatgaagttggtcattcgattgatggt
gtccaaagtgtgcctgttgctgcaggggctggtgatactaacatatgtggtggcatagtt
cagctgtattgggataacatcctagggagatgtttggatgtgaatgaacaagtgcgccaa
gcagctctaaagattgtggaagttgtgttgcgtcaaggtcttgtacatccaattacttgt
gttccatatcttattgctcttgaaacagatcctcaggaggttaactcaaagctggctcat
cacctgctgatgaatatgaatgaaaagtatccagcttttttcgaaagccgtctgggagat
ggacttcagttgtcgtttatgttcatacatagcatgaatgatgctatggcagaaatttca
aaccataaagttcatcacagtgtgaagggaaggtctgatgctggcacttcagcttatgcc
cgactaggggtttctcggatttacaagctcattcgcacaaatcgtgtttcgagaaatagg
tttatgtcttcagttgttcgcaagtttgaaatgcctaggtggaataattacgttatacct
ttcctcatgtactgtacagaaattcttgctttgttaccttttaccgcccctgatgagcct
ctttatctgatatatactataaaccgattggtacaagttcgagctgggatattagaatca
aacatgaaggatttcttgcattccgtagaaggaatttatccaaaaggtaatggaaatggg
atagttcagtctgatcaaactattcaatatgtcagcgaaagatccatgtacattgatggg
aatcacaaaatatctgaagagtttccgggtcgtcatttatctggagatcctcagtccaag
aattcagataatttggaagattcctattgcatgccaaaaattgatttacagaaaattcag
gccgattgtctggcaagtggtgccatccaacttcttttgaagctgaaacggcatctcaag
attgttttcggccttgatgatgcccgctgccaggcgtactcaccaaatgaaccccctaaa
cccggggagagtttgttgcggcagaacattttatttaatattagcgatgtaaacatagac
ccaccaaacaccagtgaagatttcttgaggaggtatcaggatttcaagaatgcattgaaa
gaagatactgttgattactcaacctacactgccaacatcaaaaagaaacggccccctcca
agaagaggtgggaaggccagccgaatggctgatgccgaagatgatgatgactatgaggat
gaaaattggactaatggagtgaacaggataaataggagtggcagaaaaggtggtgtaaga
actaggcaacggtgttag
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integrated database retrieval system
