Primulina tabacum: 142547359
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Entry
142547359 CDS
T11246
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
ptab Primulina tabacum
Pathway
ptab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142547359
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptab03021
]
142547359
03041 Spliceosome [BR:
ptab03041
]
142547359
03036 Chromosome and associated proteins [BR:
ptab03036
]
142547359
Transcription machinery [BR:
ptab03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
142547359
Spliceosome [BR:
ptab03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
142547359
Complex B
142547359
Complex C
U2 SnRNP specific factors
142547359
Chromosome and associated proteins [BR:
ptab03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
142547359
TFTC complex
142547359
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_EML_2
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
142547359
NCBI-ProteinID:
XP_075511730
LinkDB
All DBs
Position
5:complement(24854299..24860216)
Genome browser
AA seq
1189 aa
AA seq
DB search
MYLYSLTLQQATGIICAINGSFSGGKSQEIVVARGKVLDLLRPDDNGKLQSLLSVEIFGA
IRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNTFDKIHQETFGKSGCRRIVPGQYV
AIDPKGRAVMIGACEKQKLVYVLNRDTVARLTISSPLEAHKNHTICYSICGVDCGFENPI
FAAIELDYSEADQDPTGQAASEAQKNLTFYELDLGLNHVSRKWSEQVDNGANMLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRREDLPAERGVLIVSAAMHKQKSMFFFLLQ
TEYGDMFKVTLDHENDRVKELKIKYFDTIPVTSSLCVLKSGFLFAASEFGNHALYQFQAI
GDDPDVEASSATLMETEEGFQPVFFQPRKLKNLLRVDQIESLMPMMDMKVNNLFEEETPQ
IFSLCGRGPRSSLRVLRPGLAISEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKR
TVVKVGSNRLQVVIALSGGEIIYFEVDMTGQLMEVEKHEMSGDVACLDISPIPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQILSLQSVSSPPESLLFLEVQASTGGDDGADHPASLFL
NAGLQNGVLFRTVVDMVTGQLSDARSRFLGLRAPKLFSIIVRGRRAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEYAASFSSDQCAEGVVAVAGDALRIFTVERLGESFNETAIPLRYTP
RKFVVQPKRKLLVIIESDQGAFTAEEREAAKKESFESSGVGENGNIEQMENGDDEENSDP
LSDEQYGYPKAESGKWVSCIRVLDPRSALTTCLLELQNNEAAFSMCSVNFHDKEYGTLLA
VGTAKGLQFWPKRSFEAGYIHIYRLKEDGKVLELLHKTQVDGVPLALCQFQGRLLAGIGP
VLRLYDLGKRRLLRKCENKLLPNTITSIQTYRDRIYVGDMQESFHYCKYRRDENQLYVFA
DDTVPRWLTAAQHIDFDTVAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGA
PNKVEEIVQFHVGDVVTCLQKASLIPGGGECIIYGTVMGGLGAFLPFTSRDDVDFFSHLE
MHMRQEHPPLCGRDHIAYRSSYFPVKDVIDGDLCEQFPTLPMDMQRKIA
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgtacctgtacagcctaacccttcaacaagctacaggaataatctgtgccatcaatgga
agcttctctggagggaaatcacaagaaattgttgtggcgcgtgggaaagtactcgacctc
ctgcggcctgacgacaatggtaagctacagtctcttctatctgttgaaatttttggcgct
attcgctctttagctcagtttcgcctcactggagcgcaaaaagattacattgtcgttggt
tctgattctggtcgcatcgtaatccttgaatacaacaaagagaagaacacatttgataaa
atccatcaagaaacttttggaaagtctgggtgccgtagaattgtcccgggtcagtatgtg
gccattgaccctaaaggtagagctgtaatgattggtgcttgcgagaagcagaagctagtt
tatgttttgaatagggacacagtagctagattgactatctcatcgcctcttgaggcgcat
aagaaccacactatttgttattccatttgcggggtggattgtgggtttgaaaacccaatt
tttgctgctatagaattggactattccgaggctgaccaggaccccacaggtcaagcggcc
agcgaagcgcagaagaatttgaccttttatgaattggatttgggtcttaaccatgtttca
aggaaatggtctgaacaggttgataatggtgctaatatgcttgtcacagtgcctggtggt
ggggatgggccgagtggtgttcttgtgtgtgcagaaaattttgtcatatataagaatcaa
gggcatccagatgtccgagcagtgattccgaggcgtgaggacttaccggctgagcgtggg
gttttgattgtctcggctgctatgcataagcagaaatccatgtttttcttcctcttgcaa
acggaatatggggatatgtttaaagtgacactggaccatgagaatgatagagtaaaagag
ttgaagataaaatattttgatactattcctgtcacatcatctttgtgcgtcttgaagtca
gggtttctatttgctgcatctgagtttgggaaccatgccttgtatcagtttcaggcgata
ggagatgatccagatgtggaggcctcatcagctacattgatggaaacagaagaaggtttc
cagcctgtgtttttccagcctagaaaactgaagaatctacttagggtagaccaaattgag
agtctgatgccaatgatggatatgaaagtcaataatctatttgaggaagaaactcctcag
atattttcactttgtgggcggggtcctcgttcatcactccgtgtattgagacctggtttg
gctattagtgaaatggcagtatcacagttacctggtgttccaagtgctgtctggactgtc
aaaaagaatgtcaacgatgaatttgatgcctatattgttgtttcttttgcaaatgccact
cttgtgctttccattggtgagactgttgaagaagtaagcgacagtgggtttcttgataca
acgccttctcttgctgtttctttgattggcgatgattctttgatgcaagtgcatcccagt
ggtattaggcatatcagggaagatgggcgtattaatgagtggagaactccaggaaagaga
acggttgttaaggttgggtctaacagacttcaggttgtcattgcactgagtggaggggaa
attatatattttgaagttgatatgactggtcagttgatggaggttgagaagcatgaaatg
tcaggagatgttgcctgtttggatatttctcctatccccgagggaagacagagatcacgc
tttcttgctgttggatcttatgataacactattcgcattttgtctttggatcctgatgac
tgtatgcaaatactaagtctgcaaagtgtttcatcgcctccggaatctctcctatttctt
gaagttcaggcttctactggaggtgatgatggggctgaccaccctgcaagcctctttttg
aatgctggtctacaaaatggggttttattcaggacagtagtagatatggtgactggacag
ctatcagatgcccgatctcggttcttaggactcagagcaccaaagctgttttctattatt
gtgagaggacggagagctatgctttgcttgtcaagcagaccttggcttggttatatacac
caaggacatttccttctcacaccattgtcttatgagactctcgaatacgctgcttcgttt
tcatcagatcagtgtgcggaaggtgttgttgctgttgctggggatgcattaaggattttt
actgttgaaagacttggagaatcttttaatgagacagctatacctttgaggtatactcct
aggaaatttgtagttcaacccaagaggaagctgttggtaataattgagagcgatcaggga
gcattcactgcagaagagcgtgaagctgcaaaaaaggagtcctttgagtcttccggagtg
ggggaaaatggaaacattgagcagatggagaatggtgatgatgaggaaaatagtgatccg
ctttctgatgagcagtatggttatccaaaggcggagtctggaaagtgggtttcttgcatt
agagttctggatcctaggtcagctttaacaacctgtctgctagagcttcagaataatgaa
gctgcattcagcatgtgctctgtgaatttccacgataaggagtatggaacacttttggct
gttggaacagcaaaaggtcttcaattttggcccaaaagatcctttgaggctggatatatt
cacatatataggcttaaagaagatggaaaagtccttgagcttttgcacaagacacaagta
gacggtgtacctctcgcattatgccaattccaaggaagattgcttgctgggattggtcct
gtgcttagattgtatgatttggggaaaaggaggttgcttagaaagtgtgagaataaattg
ttacccaacacaatcacttccatccaaacctatcgggatcgaatttatgtcggggacatg
caagagtcgtttcactactgcaagtacagacgtgatgaaaatcagttatatgtatttgct
gatgacactgttccaagatggcttactgctgctcagcatatcgacttcgacactgtggct
ggtgcagacaaatttggaaatatctactttgtccgattgcctcaggatgtgtcagatgag
attgaagaagacccaactggtggtaagataaagtgggagcaggggaagttgaatggagca
ccgaacaaagtagaggaaatagttcaatttcatgttggtgatgtggtcacttgcttgcag
aaagcatctctgattcctggaggtggagagtgcatcatctatgggactgtaatgggtggt
ttgggggcattccttccatttacttcacgtgatgatgttgacttcttctctcatctggag
atgcacatgcggcaggagcacccacctttgtgtggcagagaccatattgcctacagatca
tcctattttcccgtgaaggatgttatagatggagatttgtgcgaacaatttccaaccttg
cccatggatatgcaacgtaaaattgcctga
DBGET
integrated database retrieval system
