Primulina tabacum: 142548412
Help
Entry
142548412 CDS
T11246
Name
(RefSeq) transcription elongation factor SPT6 homolog isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
ptab Primulina tabacum
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptab03021
]
142548412
03036 Chromosome and associated proteins [BR:
ptab03036
]
142548412
Transcription machinery [BR:
ptab03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
142548412
Chromosome and associated proteins [BR:
ptab03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
142548412
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
SPT6_acidic
YqgF
Spt6_S1
HTH_44
Tex_central_region
HHH_3
HHH_9
S1
Tex_N
Motif
Other DBs
NCBI-GeneID:
142548412
NCBI-ProteinID:
XP_075512822
LinkDB
All DBs
Position
6:478302..487532
Genome browser
AA seq
1538 aa
AA seq
DB search
MAGNTVISDDEDEIGVEEEEIDEETYGDRTHDGDGDGDEDDEDDEEGQDEYEKDGFIVDD
VDEEEGEEEENRADSDEERQKKKKRKKRDSERNYVLDEDDYELLQESNISVPRPKLESKK
FKRLKKARRDVEEGSSGFSDEEEFDGNGIGGRTAEEKLKRSLFGDDDGQPLEDIAEEDEQ
AEEEEDVDIGEEDEMADFIVDEEEVDEHGAPVRRKKPKKSRQRPGILSSALQEAHEIFGD
VEDLLRIRKLEVRDRYGETDKRSLEDQFDPSVLSEKYMTEKDDRIREIDIPERMQISEEG
TGQPAIDDLNIELEREWIFNQLVGGVVPPLMNKRGSAAEDLNEVKSHIARFLELMHVQKL
DIPFIAMYRKEEIFSLLQEPDEPEADIQNDPNWRPTLKWHKVLWTIHDLDKKWLLLQKRK
SALQLYYNKRFEEESRRVYDETQLFLNQQLFESVSKSLKAADSERELDDVDSKFNLHFPP
GEVVLDEGQFKRPKRKSQYSICSKAGLWEVANKFGYSSEQFGLQISLEKMRMDELEDAKE
TPEEMASNFTCAMFETSQAVLKGARHMAAVEISCEPCVRRHVRSIFMENAVVSTSPTSDG
NVAIDSFHQFAGVKWLRDKPFTRFEDATWLLVQKAEEEKLLQVTIKLPEVVLDKLISDSN
DYYLSDGVSRSAQLWNEQRKLILHDAFYNFLLPSMEKEGRSLLTARAKTWLLWEFGKLLW
DKVSVAPFQRKENDVNTDEEAAPRVMACCWGPSKPATTFVMLDAAGEILDVLNAPSLSLN
NQNANAQQRKRNDQQRVQKFMMDHQPHVVSLGAANLSCTRLKEDIYEIIFKMVEDNPRDV
GHNMDNLNIFYGDESLPRLYENSRISVDQLPSQEGIIRRAVALGRYLQNPLAMVTTLCGP
GREILSWKLHPFENFLTPDEKYGMVEQVMVDVTNQVGLDVNLASSHEWLFAPLQFISGLG
PRKAASLQRSLVRAGAIFTRKDLLTHHGLGKKVFINAVGFLRVRRSGLTSSSTQFIDLLD
DTRIHPEFYGLAQELAKDIYREDVNDDGNDDDDDMLEMAIEHVREKPQLLRAVDVNEYAY
QKNRLNRKETLNDIRLELIEGFQDRRRTYVEPSQDDEFYMISGETEETLSEGRIVQATVR
RIQPQRAICVLESGLTGMLSKEDIADDWRDINDLSDKLHEGDIITCKIKSIQKNRYQVFL
TCRESEMRNNRFQSHRGMDPYYHEERSTSHTEQEKARKEKELANKHFKPRMIVHPRFQNI
TADEAVEFLSNKDPGESVIRPNVRGPSHLTLTLKIYDGVYANKDIVEGGKEHKDITSLLR
IGKTLKIGEDTFEDLDEVMDRYLDPLVAHLKAMLNYRKFRRGTKYEVDELLRIEKSENPM
RIVYCFGISYEHPGTFILTYIRCSNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHID
DPLDSAPSIRSVAAMVPMRSPATGGSSGFGGGWGGSAQDDRWRGDQSMDRDRTSRTAGRG
EYRNGGGPEGHPSGAPRSYGSRGRLRERGSYGGSRGDR
NT seq
4617 nt
NT seq
+upstream
nt +downstream
nt
atggccggcaacacagtgatctccgacgatgaagatgagattggtgtcgaggaagaagaa
attgacgaagagacttacggagaccgaacccatgacggcgacggcgacggcgatgaggat
gatgaagacgatgaagaagggcaggatgaatatgagaaagatggtttcatagtggatgat
gttgatgaagaagagggggaggaagaagaaaacagggctgatagtgatgaggagaggcaa
aagaagaagaaaaggaagaaaagggactctgagaggaattatgtgcttgatgaagatgat
tatgaacttcttcaggagagcaacatctccgttcctcgcccaaaacttgagagtaagaag
ttcaaacgattgaaaaaggcacggagagatgtggaagaaggctcgtctgggttttctgat
gaagaggagttcgatggaaatggaataggagggcgtacagctgaggagaagctcaaacgt
agcttgtttggtgatgatgatggacaaccccttgaggatattgccgaggaggacgaacag
gcagaagaagaggaggatgtagacattggggaagaagatgaaatggctgattttattgtt
gatgaagaagaagttgatgaacatggagctcctgtgaggaggaagaagcccaaaaagagt
aggcaacgacctggaatattatcgtctgcactccaggaagcacatgaaatatttggagat
gttgaagaccttttgaggatacgcaagttggaagtgagggacagatatggtgaaactgat
aaaagaagccttgaagatcaattcgatcccagtgtactttctgagaagtatatgactgaa
aaggatgatcgaattagggaaatagacattcctgaaagaatgcagatatctgaagagggt
actggtcaacctgcaatagatgatcttaacattgagttggagagagagtggatattcaat
cagcttgttggtggtgtagtgccaccattaatgaacaagagaggttctgcagctgaagat
ttaaatgaagtcaagagccatattgcaagatttttggaattaatgcacgttcagaagtta
gatataccattcattgctatgtaccggaaagaggagattttcagcctattacaagaacca
gatgagcctgaagctgacattcaaaatgaccctaactggagaccaacacttaaatggcac
aaggtgctttggacaatccatgacttggataagaagtggcttcttcttcagaaaagaaag
agtgcactacagttatactacaacaagcggttcgaagaagagtcacgaagagtatacgat
gagacgcagctctttttaaaccaacaactctttgaatcagtttccaagtcactcaaagct
gctgattcagaaagagagctggatgacgttgactcaaaatttaatttgcacttcccccct
ggcgaagtcgtcctagatgaggggcagtttaaaagaccaaagaggaagtctcagtacagc
atttgcagtaaagctggcttatgggaggttgcaaacaagtttggttacagttctgagcag
tttggattgcagatttctctggagaaaatgagaatggatgaattggaagatgcaaaggaa
acacctgaagaaatggcctctaattttacgtgtgctatgtttgaaacgtctcaagctgtt
ctcaaaggtgcaaggcacatggcagctgttgagattagctgtgaaccatgtgtccggagg
cacgtccgtagcatctttatggaaaatgctgtagtgtcaaccagtcctacatctgatggt
aacgtggcaattgattcttttcaccaatttgctggagtcaagtggttacgagacaaacca
tttactagatttgaggatgcaacttggcttttagttcaaaaggctgaagaggagaagctc
cttcaagtaactatcaagctaccagaagtagttctcgataagttgataagcgattcaaac
gattattatctgagtgatggagtgagcagatccgctcaattatggaatgaacagagaaaa
ttgattcttcatgatgcgttctacaattttcttctaccttcgatggaaaaggaaggtaga
tctcttctgactgctagagcaaaaacctggttgctatgggaatttggaaagctgttgtgg
gacaaagtgtctgtggcgccgtttcagcgaaaagaaaatgatgtcaatacggatgaagaa
gcagcacccagggttatggcttgctgctggggtcctagtaagccagctactacttttgtc
atgctggatgcagctggagagattttagatgtgttgaatgctccatcactcagccttaac
aatcagaatgctaatgctcagcaacgtaagagaaatgatcagcaacgggtgcagaaattt
atgatggaccaccaaccacatgtcgtctctctaggggcagctaatttgtcttgtactcgg
ctgaaggaagatatttacgagattatattcaaaatggtggaggataatccgagagatgtt
ggtcacaatatggataatttgaatattttctatggtgacgaatctcttccacgtctatat
gaaaattctcgcatatctgtggatcagcttccctcccaggaaggtattattagacgtgct
gtggctctgggacgctatcttcagaatccattagccatggttacaacattatgtgggcca
ggtagggagatattatcttggaaactacatcctttcgagaattttctcactcctgatgag
aagtatgggatggttgaacaagttatggtggatgtaactaaccaagttggtcttgacgtt
aacttggcttccagtcacgaatggttgtttgctcctctgcagtttatttctgggcttgga
cccagaaaagcagcttctctccaaaggtctttagtaagagctggagccattttcactagg
aaagacctgttgacacatcatggtcttggtaaaaaggttttcattaatgcagttggattc
cttcgagtccgtcgtagcggattgacatccagtagtactcaatttattgatttgttagat
gatacaagaattcatccagagttttacggccttgctcaagagctggccaaagatatttac
cgggaggatgtcaatgatgatggcaatgatgatgatgatgatatgctggaaatggccatt
gaacatgtcagggaaaagcctcagttattgagggccgtcgatgttaatgaatatgcctat
cagaaaaatcgtttgaaccgaaaagaaaccctgaatgatataagattggaattaattgaa
ggattccaagatcgtcgcagaacatatgtagaacctagtcaggatgatgaattttacatg
atctcaggagaaactgaagaaactttatcggaaggaagaatcgtacaagcaacggtgcga
aggattcaacctcaaagagctatttgtgtccttgaatctggattgactggcatgctcagc
aaggaagatattgctgatgattggcgggatattaatgatttatctgataaacttcatgaa
ggtgatattataacatgcaaaatcaaatcaattcaaaaaaatcgttatcaggtgttctta
acttgtagagaaagtgaaatgaggaataaccgcttccagagccatcggggtatggatcct
tactatcatgaagaacgcagcacctcacacactgagcaagaaaaagctcgtaaagaaaag
gagcttgcaaataagcattttaagccaaggatgattgtccaccctcgattccaaaatatt
acagctgatgaagcagtagagtttctttcaaacaaggatcctggtgaaagcgtcatccgt
ccaaacgttcgtggtccttcacatttgactttaacattgaaaatctatgatggggtttat
gcaaacaaggacatagttgaaggtgggaaggaacacaaggacatcacaagcttgcttcga
ataggaaaaacattgaaaattggagaggacacctttgaggatcttgatgaggtaatggat
cgatatctggatccattggtagctcatttgaaggcaatgcttaattacagaaagtttagg
aggggcactaaatatgaagttgatgagctccttagaatcgagaaatctgagaatccaatg
agaatcgtctattgctttggtatatcttatgaacatcctggcacattcatcttaacttac
atccgatgttcaaatccacatcacgaatacataggtctctatccgaagggatttaaattc
cggaagcgaatgtttgaggacatagaccgtcttgtggcatatttccagagacacattgac
gatcctcttgattctgcaccatcaattcgatctgttgccgctatggttccaatgagaagt
cctgcaactggcggctcatctggttttggtggaggttggggtggttcagcacaggatgac
aggtggagaggtgaccaatctatggaccgagataggacttctagaacagcagggagaggt
gagtatagaaatggtggtggcccggagggtcatcccagtggggctcctagatcatacggt
agccgcggacgtttgcgtgaacgaggctcatatggtggtagtaggggagacaggtag
DBGET
integrated database retrieval system
