Primulina tabacum: 142548457
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Entry
142548457 CDS
T11246
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ptab Primulina tabacum
Pathway
ptab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142548457
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142548457
03041 Spliceosome [BR:
ptab03041
]
142548457
03009 Ribosome biogenesis [BR:
ptab03009
]
142548457
03016 Transfer RNA biogenesis [BR:
ptab03016
]
142548457
Enzymes [BR:
ptab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
142548457
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
142548457
Spliceosome [BR:
ptab03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
142548457
Complex C
U4/U6.U5 tri-SnRNP related factors
142548457
Ribosome biogenesis [BR:
ptab03009
]
Eukaryotic type
Pre-60S particles
Helicases
142548457
Transfer RNA biogenesis [BR:
ptab03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
142548457
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
142548457
NCBI-ProteinID:
XP_075512905
LinkDB
All DBs
Position
6:complement(839342..847689)
Genome browser
AA seq
997 aa
AA seq
DB search
MDKSPMSLKRKQLEESAQEKEETPLLESASKRRSLTRTCVHEVAVPSEYSSNKDESIHGT
LADPIFTGERAKSYQFKLDPFQEVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK
QRVIYTSPLKALSNQKYRELSQEFSDVGLMTGDVTLLPNASCLVMTTEILRGMLYRGSEV
LKEVAWVIFDEIHYMKDRERGVVWEESIIFLPTAIKMVFLSATMSNATEFAEWICNIHKQ
PCHVVYTDFRPTPLQHYVFPMGGSGLYLVVDENEQFKEDNFLKLQDTFTKPNFSNGNKSS
NGKAGGRIAKGGTASGGSDIYKIVKMIMERKFQPVIIFSFSRRECEQHAMSMSKLDFNMQ
DEKDVVEQVFKNAILCLNEEDRNLPAIELMLPLLQRGIAVHHSGLLPIIKELVELLFQEG
LVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDERGI
CIIMIDEKMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIKNSFHQF
QYEKTLPDIEKRVSKLEEEAAVLDASGEAEVAEYDKLKLEIARIEKKMMAEITRPERVLS
FLLPGRLVKIREGGTDWGWGVVINVVKRPPAAPGSLPAELASSRGNSYIVDTLLHCSLSS
SEDGSRPKPCPPRPGEKGEMHVVPVQLPLISAVSKLRISVPSDLRPVEARESILLAVQEL
EKRFFEGLPKLNPVKDMGIEDPEFVELANNIEELEHKLVSHPLHKQSQNENQMKSFQRKA
EVNHEIQQLKLKMRDSQLQKFRDELKNRSRVLKKLGHVDGDGVLQLKGRAACLIDTGDEL
LVTELMFNGTFNDLDHHQVAALSSCFIPGDKSNEQIHLRAELAIPLQQLRDSARTIAEVQ
RECKLEVNVEEYVEASVRPFLMDVIYCWSKGASFAEIIHMTDIFEGSIIRLSRRLDEFLN
QLKAAAHAVGEADLENKFVAASGSLRRGIMFANSLYL
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atggataagtctcctatgtcgctgaaacgaaaacaactggaagagagtgcacaagaaaag
gaggaaactcctttgctagaatctgcttcgaagaggcgtagcttaacaaggacatgtgtg
catgaggtggcagttccaagtgaatatagctcgaacaaagatgaatcaatccatggtacc
cttgctgatcccatttttactggagaaagggcaaaatcctaccaatttaagcttgatcca
tttcaggaagtttccgtcgcttgtttggaaaggaatgagtcggtcttggtttcagctcac
acttcagcaggaaaaactgcggtggctgagtatgccattgccatggcctttagggataaa
cagagggtcatatatacttccccattaaaagctttgagcaatcaaaagtacagggagttg
agtcaggagttttcagatgttggattgatgacgggtgacgtgacgcttttgcccaatgcc
agttgtttggtgatgactactgagattcttcgagggatgctgtacagaggttctgaggtg
ttgaaggaagttgcttgggtgatatttgacgagatacattacatgaaggatcgagaaaga
ggtgttgtttgggaagaaagtatcatattcttgcctactgctataaaaatggtatttctt
tcagcaacgatgtcaaatgcaactgaatttgctgaatggatatgtaatatacataaacag
ccatgccatgtggtctatacagatttccggccaacacccctgcaacattatgtattccct
atgggtggttctggtttgtatctagtagttgatgagaatgagcagtttaaagaggacaac
tttttgaaacttcaagacactttcacgaagccaaatttcagtaatgggaacaaaagttct
aatggtaaggctggtggtagaatcgcaaaaggtggaactgcctctggtggttctgacatc
tacaaaattgtcaagatgatcatggaacggaagtttcaaccagttataatctttagtttt
agcagacgagagtgcgaacagcatgccatgtctatgtccaaacttgatttcaatatgcaa
gatgagaaggatgttgtggaacaagtgtttaaaaatgcaatcctatgcttgaatgaggag
gatagaaacttgcctgccattgagctcatgttgcccttgcttcagaggggcattgctgtt
caccattctggtttacttcctatcatcaaagagcttgtggaacttctcttccaagaaggt
cttgttaaggctctgtttgcaacagaaacgtttgccatggggttgaacatgcctgcaaaa
actgtcgtttttacgagtgttaaaaaatgggatggtgatagtcatcgatatattggatct
ggtgagtatatccagatgagtggtagagctggacgtcgtggcaaagatgagcgggggata
tgtattataatgattgatgaaaagatggaaatgaacacccttaaggacatggttttggga
aagcctgcacccttggtcagtactttcaggctaagctactactcaattctgaatttgatg
agccgtgctgagggtcaattcactgccgagcatgttatcaaaaattcctttcatcaattt
cagtatgagaagactttacctgacattgagaaaagagtctcaaaacttgaagaagaagct
gctgtgctagatgcttctggagaagctgaagttgctgaatatgacaaactaaagcttgag
attgctcgaattgaaaagaaaatgatggctgaaataactcgtcctgaaagagttctctct
ttccttctacctggtaggctggttaagataagggaaggtggaacagattggggttgggga
gttgtgatcaatgtggttaaaagacctcctgctgcaccgggttcgttgcctgctgaactt
gcttcttcacgtggtaatagttatattgttgataccctcctccactgctctctcagctcc
agtgaagacggttctcggcccaaaccatgccctccacgcccgggagaaaaaggtgaaatg
catgtggttccggttcaattgcctcttatatctgcagtaagcaagctcagaatatctgtt
ccttctgacttgcgtccagttgaagctcgggaaagtattttgcttgcagtgcaggagctt
gaaaaacgattttttgaaggtcttcccaagcttaatcctgtgaaggatatgggaattgaa
gatccagaatttgttgagttggcaaacaacattgaggaacttgaacacaaattggtttct
cacccactgcacaagcagtctcaaaatgaaaatcagatgaaaagtttccagagaaaagct
gaagtgaatcatgaaattcaacaacttaaattaaaaatgcgtgattcccagcttcaaaaa
tttcgtgatgagctcaagaaccgctcacgggttctcaaaaaacttgggcatgttgatggt
gatggcgtccttcagctgaagggacgggcagcctgcttgatagatactggggatgagctc
cttgttactgaattgatgttcaatgggacctttaacgatctggatcatcaccaagttgct
gctctgtcaagttgcttcatcccgggggacaaatcaaatgaacaaatacatctaagagcg
gaacttgctataccattgcagcaacttcgagacagtgcgagaacaatagcagaggtgcaa
cgtgagtgtaagcttgaagtgaatgtggaagaatatgttgaggcatcagttagaccattc
ttgatggatgtgatttattgctggtcaaagggagcatcttttgctgaaatcatacatatg
accgatatatttgaagggagcatcatacgactatctagaaggcttgatgaatttttaaac
cagttaaaagctgctgctcatgctgttggagaagcggatttagagaacaagtttgttgct
gccagcggaagccttcggcgtggtataatgtttgcaaattctttgtatctctga
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