Primulina tabacum: 142549360
Help
Entry
142549360 CDS
T11246
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B-like
KO
K07466
replication factor A1
Organism
ptab Primulina tabacum
Pathway
ptab03030
DNA replication
ptab03420
Nucleotide excision repair
ptab03430
Mismatch repair
ptab03440
Homologous recombination
ptab03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
142549360
03420 Nucleotide excision repair
142549360
03430 Mismatch repair
142549360
03440 Homologous recombination
142549360
03460 Fanconi anemia pathway
142549360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ptab03000
]
142549360
03032 DNA replication proteins [BR:
ptab03032
]
142549360
03400 DNA repair and recombination proteins [BR:
ptab03400
]
142549360
Transcription factors [BR:
ptab03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
142549360
DNA replication proteins [BR:
ptab03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
142549360
DNA repair and recombination proteins [BR:
ptab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
142549360
MMR (mismatch excision repair)
142549360
DSBR (double strand breaks repair)
HR (homologous recombination)
142549360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
DUF223
tRNA_anti-codon
Motif
Other DBs
NCBI-GeneID:
142549360
NCBI-ProteinID:
XP_075514391
LinkDB
All DBs
Position
6:37799697..37803233
Genome browser
AA seq
624 aa
AA seq
DB search
MAKTASPDAISTILSNPCPDSTSDLPEIIIQVVDLKPTGSKYMFMASDGKKKVRALLQST
LSSEVTSGNIQNLGLIRILDYALNDIPTKNEKFLIVSKCESVCPALESEYKSEVKTEETE
MVLKPEQEIHVKIEVKSEGTGIVLKPKQEIVAKSAHQIVQEQHGNMAPGARLSMTRRIHP
LVSLNPYQGNWTIKVRVTSKGTMRFYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKF
YDKFQMGKVYFISKGALKVANKQFKTVQNDYEMTLNENSEVEEVFNEAAFIPDTKFNFVP
IDELGPYVHGRELVDVIGVVQDVSPTMSIRRKSNNESVPKRDITIADETKKTVVVSLWND
LATNVGQELLDISDKSPIVAIKSLKVGDFQGVSLSTLSKSVLVVNPATPEAKKLRSWFES
EGRETPMASVGSGLSPSSKGGVRSMYSDRVSLAHITNNPSLGEDKPVFFCIKAYISTIKP
DQTMWYRACKTCNKKVTEAVGSGYWCEGCQKNEEECSLRYIMGVKVSDASGEAYLSVFNE
QAEMLLGCSADELNALKSQDGGSSYQMKLKEATWVPHLFRVSVTPQVYNNEKRQRITVKA
VAPIDYVAESNHLLEEISKMKVSK
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggccaaaacggcgagcccagatgcgatatctacgattctttctaacccatgtcctgat
tctacgtcagatttgccggaaattatcatacaagttgtcgatctgaagcccacggggtcg
aaatacatgtttatggcgagtgatggtaagaagaaggtgagggcactgttgcagtccact
ttatcatcggaagtaacctctgggaacattcagaatttgggtctcattcgcattcttgat
tacgctctgaacgacatcccaacaaagaacgaaaagttcttgattgtatcaaaatgcgag
tctgtatgtccagcgcttgagtcagagtacaagtcagaagtgaaaaccgaggaaactgag
atggtgttgaagcctgagcaggagattcatgtcaagattgaagtaaagagtgagggtacc
ggcattgtattgaagcctaagcaagaaattgtggctaaatcagctcatcaaatagttcaa
gaacaacatggaaatatggcacctggtgcacggttgtctatgactcggagaattcatccg
cttgtgtccttgaatccataccagggtaattggaccataaaggtccgtgtcaccagcaaa
ggaacaatgcgtttttacaagaatgctagaggagaaggttgtgtgtttaatgtagagttg
acagatgaagatggaacgcaaatacaagcaacaatgttcaacgaggcagcccggaagttc
tatgataagtttcagatggggaaggtctattttatatcaaagggcgcattgaaagttgcc
aacaagcaattcaaaactgtacaaaatgattacgaaatgaccttgaatgaaaattctgaa
gtcgaggaagtcttcaatgaggcagcttttattcctgacacaaaattcaattttgtcccc
attgatgaactaggcccatatgtccatggaagagaacttgtggatgtaattggtgttgtc
caagatgtatctcctacaatgagcattcggaggaaaagtaacaatgagtcggtgccaaag
cgtgatataacaattgctgatgagacgaaaaagaccgtagtggtgtctctttggaatgat
cttgccacaaatgttggacaggaactgctggatatttcagataaatctcctattgttgcg
ataaaatctctgaaagttggagatttccagggcgtatcattgtcaacgctgagcaaaagt
gttttagtagtcaatccagcaacaccggaagccaaaaagttgagatcttggtttgaatct
gaaggtagagaaacacctatggcctctgtaggttctggtttaagcccttcctcgaaaggt
ggagtgcgttctatgtactctgaccgggtctctttggctcatattactaataacccctcg
ttgggtgaggataagcccgtatttttctgcatcaaagcgtacattagcactatcaaaccc
gaccaaacaatgtggtatcgggcttgcaagacatgtaacaagaaagttaccgaagctgtt
ggttcaggctattggtgtgaaggatgccaaaaaaatgaagaagagtgcagtttaagatac
ataatgggagtaaaagtttccgatgcgagcggtgaagcctatctatctgtgttcaatgaa
caagcagaaatgttacttggatgctcagcagatgagctaaatgcattgaaatctcaggat
ggagggagttcttatcaaatgaaactcaaagaagctacatgggttcctcaccttttccga
gttagtgttacaccacaggtgtacaacaacgagaagaggcagaggataactgttaaagct
gttgcgcctattgattacgtagctgaatccaatcatttgcttgaagaaatatcaaagatg
aaagtttctaaatag
DBGET
integrated database retrieval system
