Primulina tabacum: 142549465
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Entry
142549465 CDS
T11246
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein MSH7
KO
K08737
DNA mismatch repair protein MSH6
Organism
ptab Primulina tabacum
Pathway
ptab03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
142549465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptab03400
]
142549465
DNA repair and recombination proteins [BR:
ptab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
142549465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
AAA_29
Motif
Other DBs
NCBI-GeneID:
142549465
NCBI-ProteinID:
XP_075514538
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Position
6:complement(39631871..39644513)
Genome browser
AA seq
1085 aa
AA seq
DB search
MAARQPRNTKVADSFIWAPKLSREIIAKPASPVPDPKMQRQKSILSFLKPQNSGGGKDVS
GAGTSLEKMPRQGLAEDGGIVATPSVFSSIKHKFVRSEGGMTASTDCRFKGDETSIIQYL
TDKYRGQEDIGNGYLGPKHLNKHNEFNASKTISSNGKKWCSSETIREDIIVPDKSGTRPV
VPGLKRVQESLFNCKENADVPASSCNKKQKILMTTDIGTKDHNDDFKLISKFEWLHPSQI
KDANGRNIGDPLYDKRTLYIPPDALSRMSASQRQYWNVKCQYMDTVLFFKVGKFYELYEL
DAEIGHKELDWKMTLSGVGKCRQVGISESGIDGAVQKLIAHGHNVGRMEQIETSDQAKSR
GTTSVIQRKLVRVISPATNDDNIGPDAVHLLAIKENGSTGFGFAFVDCAALKFWVGSISD
DISCAALGALLVQVSPKEIIYEKRGLSNEAQRTLEKYSVTGLSASQLTPADAFCEAMEVK
NSIVSNRYFSGSCDSWHSVLDGVAQHNLALCALGGLINHLARLMLNDVIRNGDISSYEVY
GGCLRMDGQTLVNLEIFSNNADGSNSGTLYKYLNNCITSSGKRLLRNWICHPLKDVEKIN
YRLDVVEDLIANSEVVLQISQSLRKLPDLERLLGCIKSGIQSSALLLLPLIGSKILKKRV
RVFGLLIKGLRAGMDMLMAIQDQGHVTSLSKVVALPMLRGSEGLDKFLVQFEGAIDSDFP
NYQNHDVRDSEAETLAILMELFIEKVAQWSQVIHAINNIDVLRSFAVAAINSAGVMCRPV
LFPQSKFLNPAIEVMHPLLETKGLWHPYALGENGGLPVPNNIHLGGNGRVPCTMLLTGPN
MGGKSTLLRATCLAVILAQLGFFVPCEMCALSVVDIIFTRLGATDRIMTGESTFLIECTE
TASVLQNASQDSLVVLDELGRGTSTFDGYSIAYAVFRQLVETVHCRLLFATHYHALTKEF
SGHPLVTLQHMACSFSSNKKNELVFLYRLTSGACPESYGMQVALMAGISEQVVESATKAA
QIMKKKIGKSFELCEKRGNFSTLHEEWVKSLLCMSNTKEINSDDDTFDALICLWHEVKSS
YKVLT
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atggctgcacgacaaccacgtaatactaaagttgctgattcgttcatttgggcgccaaag
ttgtctcgtgaaataatagccaagcccgcctctccagttcccgacccaaaaatgcagcgg
caaaaatctatactctcgtttctaaaacctcagaactccggcggaggaaaagatgtctct
ggtgcaggcacctcgctggagaagatgccgcggcagggcttggctgaagacggcggcatc
gtcgccactccttcggtcttctccagcattaaacacaaattcgtgagatccgaaggcgga
atgaccgcttcaactgattgcagattcaaaggggatgaaacttctattattcaatatctc
actgataaatatcgtggacaagaagatataggcaatggatatttaggtcccaagcatctt
aacaaacacaacgaatttaatgcaagcaaaacaatcagctccaacgggaaaaagtggtgt
tcctctgaaactataagagaagatattattgttccagacaagtcgggaacgaggccggtt
gtcccgggtttgaagagagttcaggagagccttttcaattgcaaggaaaatgctgatgtt
cctgcttctagttgtaataaaaaacaaaagattctaatgactacggatattggaaccaaa
gatcataatgatgactttaaacttatcagcaagtttgaatggctccatccctctcagatc
aaggatgccaatggaagaaatattggtgaccctttatatgataagagaacactttacatt
cctcctgatgctttgagcagaatgtcggcatcgcaaagacagtattggaatgtcaaatgc
cagtacatggacacggttctcttctttaaagtgggaaaattttatgagctatatgaatta
gatgctgaaattgggcacaaggaacttgattggaaaatgacactaagcggtgtgggaaaa
tgtcgacaggttgggatatctgagagtggaattgacggtgctgttcaaaagttgatagcc
catgggcacaatgttggccggatggaacaaatagagacatcagatcaagcaaaatcacgg
ggcactacttctgtcattcaaaggaaattagttagagtaatctcacccgcaacaaatgat
gacaatattgggcctgatgctgttcatcttcttgccataaaagagaatggttcaactgga
tttgggtttgcatttgtggactgtgctgctttaaaattctgggttggctccataagcgat
gatatatcatgtgctgctttgggggctttattagtgcaggtatctccaaaggaaatcatc
tatgaaaaacgaggattgtcgaatgaagctcagagaacacttgagaagtatagtgtgact
gggttgtctgcgtcacaattgactccagctgatgctttttgtgaagctatggaagttaaa
aattctattgtgtccaatagatactttagtgggtcttgtgattcatggcattctgtacta
gacggagtggcacagcacaaccttgcattatgcgctcttggtggacttatcaatcatcta
gcacgattgatgttaaatgacgtcattcgcaatggagatatttcatcttatgaagtctat
gggggttgtcttcggatggatggtcagactctcgtgaaccttgagattttcagtaataac
gctgatggaagtaattcaggcacactgtacaaatatcttaataattgcataacatcttct
ggtaaacggcttttaaggaactggatatgccacccgcttaaagatgtggaaaaaataaat
tacagactagatgttgttgaggacttgattgcaaattcagaagtcgtgttacaaatttcc
caatctctccgaaagcttccagatttagaaaggttacttggatgcataaagtctggcatt
cagtcctctgctttactcttgttgcccttaattggcagcaagatattgaaaaagcgagta
agagtgtttgggttgctcataaaaggactacgagccgggatggacatgttaatggccata
caagatcaaggacacgtgacctcattatcaaaagtggtagcccttcctatgctgagaggc
agtgaggggcttgacaagtttcttgttcagtttgaaggagcaatagatagtgactttcca
aattaccagaaccatgatgtgagagattcagaagctgaaaccttggcaattttgatggag
ttattcattgagaaggttgctcagtggtctcaagtcatacatgccataaataacatcgat
gtactgagatcttttgcagttgcagcaattaattccgctggagtgatgtgtagacctgtt
ctttttcctcagtctaaatttcttaatcctgccatcgaggtaatgcatcctcttcttgaa
actaaagggctgtggcatccttatgcccttggcgaaaatggggggctaccggtgccaaac
aatatccacctcggaggaaatggaagagttccttgtactatgctattgactggcccgaat
atgggcggaaaatcgacccttttacgtgcaacttgtcttgctgttatactggcacagcta
ggtttttttgtgccatgtgaaatgtgcgctctttcagttgtagacataatattcacacgg
cttggtgcaacagatcgaattatgactggcgagagtacctttctcattgagtgtacagag
actgcatctgtcctgcaaaatgcctcgcaggactcacttgttgttcttgatgaattgggt
cgaggaacaagtacttttgatggatactctatcgcatatgctgtatttcgccaactcgtt
gagacagtccactgccgtttgctgtttgcgactcattatcatgctctcacgaaggagttc
tctggtcatcctcttgttaccttgcaacatatggcatgtagtttcagttcgaacaaaaaa
aatgagctcgttttcctctatcggctcacatctggagcatgcccagaaagctatggaatg
caagtagctctcatggctgggatttccgaacaagtggttgaatcagccacaaaggctgcg
caaattatgaagaaaaagatcggaaaaagtttcgagttatgcgagaaaaggggaaacttt
tcaactttacatgaagagtgggtcaagtctttactttgtatgtctaacacaaaggagatc
aattcagatgacgacaccttcgatgctctaatttgcctgtggcatgaagttaaaagttca
tataaggtgctcacctga
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