Primulina tabacum: 142550116
Help
Entry
142550116 CDS
T11246
Name
(RefSeq) putative tRNA pseudouridine synthase
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
ptab Primulina tabacum
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ptab03016
]
142550116
Enzymes [BR:
ptab01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
142550116
Transfer RNA biogenesis [BR:
ptab03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
142550116
Prokaryotic type
142550116
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
142550116
NCBI-ProteinID:
XP_075515470
LinkDB
All DBs
Position
1:54187668..54194594
Genome browser
AA seq
515 aa
AA seq
DB search
MAVFILLRTPIAPCLFTPAKMVNSSNKNKLFQLILRFYSASSSAAPDRAPLQLLETAYKW
KPFRKKKVVMRIGYVGSDYRGLQIQRDEHAFSPVEGELEKAIFSSGGIRESNFGDLHKIG
WARSSRTDKGVHSLATLISLKMEIPEFAWNNDPNGFILAGYINSHLPENIRVFSIVPSQR
SFDGRRECSIHKYSYFLPADIIGVKKTSTAVEIDHHISYFNDILNGFKGEHPFHNYTVQA
KYRKQFPLKSCGNGSAWKRKISSNVQNGSVSEESDGEDIHVTTLMTDSGEKEHSPHFPCS
DRTLTGPFDEEADNLKKLDPMLPVLARWLHEPDAKDKLTGSRVRKILQCYCGKLEQMSGL
NYVEISICGESFMLHQIRKMVGTAVAIKRNLLPRDILQLSLSKFSRIVMPLAPSEVLVLR
GNDFDVRKRPGNIRRPEMLTLVESEQILDLVDDFYGSVMLPQLATFLDPSKAPWKDWVEI
LDTNTRIPESQLNEVRIARYLWKDELESRKKNIAV
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atggcggtcttcattcttctgcgaactccaattgcgccatgtttgtttactcctgctaaa
atggtgaattctagcaacaagaataagcttttccagttaattctccgcttctactccgct
tcatcttccgctgcccccgacagagctcctctgcagctgctggagacggcctacaaatgg
aaaccttttcgcaagaagaaagtagtcatgcgcatcggctatgtaggttctgattaccga
ggtttgcaaattcaaagagatgaacatgcgttttctcctgttgaaggtgaactagaaaag
gcaatttttagttctggtggaataagagagagcaattttggggatttgcacaaaattgga
tgggcaagaagtagccgaacagacaaaggggttcattcattggcgaccttgatatccctc
aaaatggagatacctgagtttgcttggaataatgatcctaatggcttcatccttgctggt
tatataaattcacatcttcctgaaaacataagagtcttcagcattgtaccttcacaaagg
agttttgatggcagaagggaatgtagcatccataaatattcttattttcttcctgctgat
attattggagtgaaaaaaacttctactgctgttgaaattgatcaccatatatcatatttc
aatgatatattgaatggcttcaagggagaacatccattccacaattatacagttcaagct
aaatacaggaaacagtttcctctaaaaagctgtggaaatggttctgcctggaaaaggaaa
atttcgtcaaatgtgcaaaacggctccgtgtcagaggaaagtgatggagaagatattcat
gtaacaactttgatgacagattctggagagaaggagcatagccctcattttccatgctcc
gatcgaactttaaccggaccttttgatgaggaagcggacaacttgaaaaaactagatccc
atgttacctgtgcttgctcggtggttgcatgaacctgatgcaaaggacaaacttactggt
tctcgtgttcgtaagattcttcagtgttattgtggaaaattggagcagatgtctggtttg
aattatgttgagatatccatttgtggagagtcattcatgctgcatcaaatacgcaaaatg
gtaggaacagccgtggcaattaagcgcaatttacttcccagagacattttgcagttgtcc
ttatccaagttctccaggattgttatgccccttgctccatctgaagttctggtactgagg
gggaatgattttgatgtcagaaaacgaccagggaacataagaaggcccgaaatgttgaca
ctggttgaatcagaacagatccttgacttggttgatgacttctatggttccgtgatgtta
cctcagttggccacttttttagacccttcaaaggctccatggaaggactgggttgaaata
ctagacacgaacactaggattcctgaatcccaattgaatgaagttaggattgctcggtat
ttgtggaaagatgaattagagtctcgtaaaaaaaatattgcagtttga
DBGET
integrated database retrieval system
