KEGG   Primulina tabacum: 142551206
Entry
142551206         CDS       T11246                                 
Name
(RefSeq) sm-like protein LSM4 isoform X1
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
ptab  Primulina tabacum
Pathway
ptab03018  RNA degradation
ptab03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ptab00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    142551206
  09123 Folding, sorting and degradation
   03018 RNA degradation
    142551206
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ptab03019]
    142551206
   03041 Spliceosome [BR:ptab03041]
    142551206
Messenger RNA biogenesis [BR:ptab03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     142551206
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     142551206
Spliceosome [BR:ptab03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    142551206
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 142551206
NCBI-ProteinID: XP_075516418
LinkDB
Position
7:complement(27162575..27166445)
AA seq 149 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
VRGNTIKYLRVPDEVIDKVQEETKRSDRKPPGVGRGRGRGRDENSAGRSSKGIGRGGIDD
GGGRGGRGKGLSGSKPSGNRVAGGGRGRG
NT seq 450 nt   +upstreamnt  +downstreamnt
atgcttccgctttcgctgcttaagactgcacaagggcatccaatgttggtggagctgaaa
aatggggaaacttataatgggcatttggtgaattgtgatacttggatgaatatccatctt
cgagaagtcatctgtacctcgaaggatggagatagattttggagaatgccagaatgctac
gttcgtggcaatacaattaagtacctccgagttccagatgaggtcattgataaagttcag
gaagaaactaagagatcagacagaaaaccacctggagttggacgtggaagaggaagaggt
agagacgaaaactcagctggaagatcctcgaaagggattgggcgtggtggtatagatgat
ggaggtggccgaggaggccgaggaaaaggtttgtctggcagcaaaccgtccggtaacaga
gtggcaggtggaggtcgcggacgtggttga

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