Primulina tabacum: 142551206
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Entry
142551206 CDS
T11246
Name
(RefSeq) sm-like protein LSM4 isoform X1
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
ptab Primulina tabacum
Pathway
ptab03018
RNA degradation
ptab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142551206
09123 Folding, sorting and degradation
03018 RNA degradation
142551206
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142551206
03041 Spliceosome [BR:
ptab03041
]
142551206
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
142551206
mRNA degradation factors
5'-3' decay
Lsm complex
142551206
Spliceosome [BR:
ptab03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
142551206
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
142551206
NCBI-ProteinID:
XP_075516418
LinkDB
All DBs
Position
7:complement(27162575..27166445)
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AA seq
149 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
VRGNTIKYLRVPDEVIDKVQEETKRSDRKPPGVGRGRGRGRDENSAGRSSKGIGRGGIDD
GGGRGGRGKGLSGSKPSGNRVAGGGRGRG
NT seq
450 nt
NT seq
+upstream
nt +downstream
nt
atgcttccgctttcgctgcttaagactgcacaagggcatccaatgttggtggagctgaaa
aatggggaaacttataatgggcatttggtgaattgtgatacttggatgaatatccatctt
cgagaagtcatctgtacctcgaaggatggagatagattttggagaatgccagaatgctac
gttcgtggcaatacaattaagtacctccgagttccagatgaggtcattgataaagttcag
gaagaaactaagagatcagacagaaaaccacctggagttggacgtggaagaggaagaggt
agagacgaaaactcagctggaagatcctcgaaagggattgggcgtggtggtatagatgat
ggaggtggccgaggaggccgaggaaaaggtttgtctggcagcaaaccgtccggtaacaga
gtggcaggtggaggtcgcggacgtggttga
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