Primulina tabacum: 142551442
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Entry
142551442 CDS
T11246
Name
(RefSeq) uncharacterized protein LOC142551442 isoform X1
KO
K06100
symplekin
Organism
ptab Primulina tabacum
Pathway
ptab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
142551442
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptab03021
]
142551442
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142551442
Transcription machinery [BR:
ptab03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
142551442
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
142551442
U7-dependent histone pre-mRNA processing factors
142551442
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
142551442
NCBI-ProteinID:
XP_075516795
LinkDB
All DBs
Position
7:complement(34870812..34901513)
Genome browser
AA seq
1333 aa
AA seq
DB search
MAVAPVREQALPLLAAANNHGDLAVKISSLKQAKDILLSVEPSHAADLYPFLLELQFSPE
TLVRKYLIEVIDEIGEKTMEHLSVFFPVLLTFLKDNNPKLSKQAIIAGTKFFYRSLEELA
FQFQRHGIVERWLEELWTWMMKFKDAILDIIFEVGTVGPKLLAIKFMEKYVLHFTFHSND
PRTFNPEVMIRPGSEFNISWIIDGHPIVDPSVFVKDATRYLGILLDMLRSASNFLGSLTI
AVINSLAAIARKRPVYYNSILTALLDLDPNWEMVKGRHTVSIQFSLRTAFLGFLRCTHPI
IVESREILLKALRAMNAGEAADQVIRQMDKLMKNNERASRDLRLNKDDQIPNQSHIAGDV
TKKRLAPMENDDQNNCQDVSSKRIRYGPRNTTAAANAVLNDAGQDPVNGISPKLSVIDEN
LSPVEQMIAMISALIAEGERGVDSLEILISNIHPDLLSDIVIMNMKHLPKSPPPLSQFSD
LSYSINDASSDPSQISPSNGLTTSLPTLGPSEVSASLSNTISLPFSDMSTSTNLSADSKR
DPRRDPRRLDPRRMMVPVDVTPSSHMEDNVDPIHHHVVQSDLDVPNSSCPLSLIPPSNSE
SISIALVPKVETISNPSETPSISEANRSVLKDEVPDMEAMEFITSGEINNASHLLPSSAS
KVDDTHGAVPLDFAPPDGTYSPSSQDTDQLSPNFSNVEISEIASSLLPVLPQFIELTEEQ
QREVKKVALERIINLYPRLERMDSKNAQMALVARLFAQTDVNDVAGMVQKYIMSDYDRQK
GHELVMHILYHLHSLVISDSASSAAIAYEKFLLGLAKALVANLPASDKSFSRLLVEVPSI
PDSVLRLLEDLCTESHSEADGRDGDHVTQGLGAAWSLILVRPPNRQACLDIALKCAVHSK
DDVRAKAIRLVANKLYAISYISGKIEHFATKMFLAAVDERVSETGIFNSAAVPEKQIEIQ
VESQDTSISDSQVSEAGSSQNDSVKGSQDQFPNDSSISFSQAQSYISCFFALCSKKPSLL
QLVFDNYTHSPKAVKQAVHRHVPILIRALESPYSELLQIISNPPQGSEDLLTQVINILSE
GTIPSPDLVVIVKHLYETRLKDATILIPILSAFSRDEVLPIFPRLVHLPMDAFQTALAHV
LQGSAHTGPALTPAEVLVAIHDISPERDGLPLKKITDACSACFEQRTVFTQQVLSNALNQ
MVDRTPLPLLFMRTVIQAIDAFPTLVDFVMEILSKLVHRQIWRMPKLWVGFLKCISQTQP
HSFRVLLQLPTPQLESALNKHANLRGPLISFANQSSVRNSISRTTSLFLGLETEAQVQQP
HITSSLHGLDPNS
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atggctgtggcgccggtgcgggagcaggctctcccactgttggcggctgcgaataaccat
ggggatttggctgtaaagatttcgtctttgaagcaggccaaagatattctgttgtccgtt
gagccgtctcacgccgctgatctttatccattcttgcttgagcttcagttttcccccgaa
acccttgttagaaagtacctcattgaggtaattgacgagattggagaaaaaacaatggag
catctgtccgtattttttcccgtgttattaacattcttgaaagataataatcccaagctt
tcaaagcaagctattatcgccggcacaaaatttttttatcggtcattggaggaattagca
tttcagtttcaacggcatggtatagttgagaggtggcttgaagagctgtggacctggatg
atgaagttcaaggatgctattttggacattatttttgaggttggtactgttggtccaaag
ttgttggcgataaagtttatggaaaaatatgttttacacttcacatttcattcaaatgat
cctcgaacattcaatccagaagttatgataagacctggaagtgagttcaatatctcatgg
atcattgatggtcatcctatcgttgatccgtcagtttttgtcaaagatgcgactagatat
ttgggcatcttgttggacatgctacggtcagctagtaatttccttggttcgttgacgata
gctgtcattaatagtcttgcagcaattgcacggaagaggcctgtgtactacaattctatc
cttactgcactgcttgatttggatccaaactgggagatggtgaagggtcgccatactgtc
agcattcagttttctttgagaactgcatttttaggatttttgaggtgtacacatccaatc
attgtcgagtcgagggaaatattgctgaaggctttgcgagctatgaatgctggagaagct
gccgatcaagttatccgacagatggataaactaatgaaaaacaatgagcgtgcatcacga
gatttgagattgaataaggatgatcagataccaaatcagtcgcatattgcaggagatgtg
acaaagaaaaggttggcgccgatggagaatgatgatcagaataattgccaggatgtttct
tctaagagaattcgatatggtcctcgtaacacaactgcagcagcaaatgctgttctcaat
gatgctggacaggaccctgtcaatgggatctcccctaaactttctgtaatagatgagaat
ctgagtcctgttgaacaaatgattgctatgattagtgctctaattgcagaaggtgaaaga
ggggtcgactctctggaaattcttatatccaacatacacccggatttactctcggatatt
gttataatgaatatgaagcacttgccaaaatctccacctcctttgtctcaattcagcgac
ttgtcttacagtattaacgatgcttcaagcgatccatctcagatatctccatcaaatggt
ttgactacttctttaccaactttaggcccttcagaagtatctgcatctctatcaaacacg
attagcctgccattttcagatatgtccacttccaccaatctttctgcagattccaaacgt
gatcctcgaagggatcctcgtcgccttgatccaagacgcatgatggtacctgtagatgtg
acaccgtcatctcatatggaagataatgtagatcctatccatcatcatgttgtacagtct
gatttagatgttcctaactcctcttgtccactgtcattgatacctccgtctaattctgaa
agtatttccatcgctctggttcccaaagttgaaactatctcaaatccatctgaaacccct
tcaatctcagaagctaatagatcagttttgaaagatgaagttccagatatggaagccatg
gaatttattacgagtggggaaataaataatgcttcacatcttttgccgtcctctgccagc
aaagttgatgacactcatggggctgtaccactggattttgctcctccagatggcacttat
tccccatcatcacaagacactgaccagctttcacccaatttttcgaatgttgaaatatct
gaaattgcatcttcactgttgccagtgcttccccaatttattgagctaactgaagagcag
caaagagaggtgaagaaagtggcactggaacggataattaatctgtacccacgtttggag
agaatggattctaagaatgcacaaatggcgttggttgcccgattgtttgcccagactgat
gtcaatgatgtcgctggaatggtgcaaaaatatattatgtcagattatgatcgacaaaag
ggacacgagttggttatgcatattctttatcatctgcactctcttgtgatctcggattca
gcatcatctgctgccattgcatatgagaaattccttctgggattggcgaaagctttagta
gctaatttaccagcatctgataagtcttttagccgacttcttgttgaagttccttctata
cctgattctgtgttgaggctgctggaggatctatgtactgagagtcattctgaggcagat
ggtcgtgatggtgatcatgtcactcagggtcttggcgcagcatggagcttaattttggtg
cggccacccaatcgtcaagcgtgcttggatatagctttgaagtgtgctgttcattcgaag
gacgatgttcgtgcaaaagccattcgcctggtggccaacaaactttatgcaattagctac
atttcgggaaaaattgagcattttgcaaccaaaatgttcctggcagctgtagatgagcgt
gtttctgagacagggatttttaattctgctgcagtacctgaaaaacaaattgaaatacag
gtggaaagccaagatacatccataagcgattctcaagtttcagaagctggaagttctcaa
aatgactctgttaagggctcacaggatcagtttcctaatgattcttcaatctcattttct
caagcacagagctacatttcttgtttttttgctttatgctcaaagaaaccaagtcttctt
caactggtgttcgacaattacacacactcccccaaggctgttaagcaggctgtgcatcgt
catgttcctattcttataagggctcttgagtcgccatattctgaattgcttcagataata
tctaacccaccccaaggaagtgaagatttactgacacaggtgattaatatattgtccgaa
gggacaataccttctccagatttagttgtgattgtcaaacatttatatgagactagacta
aaggacgctactattcttataccaatactatcagctttttcaagagatgaggttttacct
attttccctcgacttgttcaccttccgatggatgcatttcaaacagcacttgctcatgtt
ttacagggttctgcccatacaggtcctgccttgacacctgctgaagtcttggttgcaatc
catgacatttctcctgagagagatggtctccctctcaagaagattacagatgcatgctca
gcttgttttgagcaacgaacggtttttacacaacaagtgctttcaaatgccctaaaccag
atggttgatcgaactccacttcctttgctcttcatgagaactgtaatccaagcaattgat
gcatttccaacactggtcgattttgtcatggaaattctgtccaaacttgtgcatcggcag
atatggagaatgccgaagttatgggttggattcttgaaatgcatctcacaaacacagcca
cattccttccgtgtattattacagctacccacacctcagcttgaaagtgctctgaataaa
catgcaaatcttcgtggtcccctgatttcttttgcaaatcagtcaagtgttagaaactct
atatctaggacaacatcactttttcttggcctcgagaccgaagcacaagtgcaacaacct
catattacatcatctttgcatggcttggatccaaattcatga
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