Primulina tabacum: 142551764
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Entry
142551764 CDS
T11246
Name
(RefSeq) uncharacterized protein LOC142551764 isoform X1
KO
K06100
symplekin
Organism
ptab Primulina tabacum
Pathway
ptab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
142551764
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptab03021
]
142551764
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142551764
Transcription machinery [BR:
ptab03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
142551764
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
142551764
U7-dependent histone pre-mRNA processing factors
142551764
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_EZ
HEAT_2
Adaptin_N
mTOR_dom
Motif
Other DBs
NCBI-GeneID:
142551764
NCBI-ProteinID:
XP_075517267
LinkDB
All DBs
Position
7:38059899..38071374
Genome browser
AA seq
1331 aa
AA seq
DB search
MVGKRTGSISRAKISGRIKSVKYGGSGDIASKLNQLRRLREELCGVDSVLFEEFLYPLLD
LLSDSFSPVRKSITEIVGQIGLKHAEFLPEIVPALINILKDDVPAVARQAITCAIDIFRC
TLIKVVIQGLYSSEFDESLKSSWEYVLKLRDEIYSLAFKVGSDGRRLPALKFVESVVLLY
SPDPNGSLEPSSDQVSEEEFNVSWLRGGHPILNVGDLSLEASKSVGKLLDQLRLPAVKSV
SNLMIIVLIKSLSTVARKRPAFYGRILPVLLGLDPSVSASEDFHISGSRHALKNAFECCL
NCTHSGAVPWRDRLLSALSEMELGKASEQEWDLMRENNGTIDLKDDSHISQTHEDGKSSD
GALAIEQSYAGRKRPGLHDGSDFTQDNMSGKRVKSTVGIIDGSVHDPKGNQVNVPSVGRA
SSHTAAESGPVPQLVAMFSVLVAQGEKAAASLEILISSISADLLADVVMANIRNLPPIYP
KSEGDEVPLLDIGPPPGVEHDAHIKNLSLLLTEILSHPSSSQLKEDKTGSHHHSGLRELE
HAQEEEVTQATVGDGNVAYDGLDFSRQQASVSTGESGSCEDIPSGIHTGNSAIKSEVTDA
KLQEEEIPSLSLSTQDGRIDENLTALLSNSTNLEDANNDKATNFGNSPVELAQSLSTDRS
EELSPKVAVTDSTSINSSMPTSLGMIAQLVFPKITAPVIVLVDEQKDQLQELAFLRIIDA
YKQVTAAGGWQLRVSILAHSGIEFPSELDPWKSLKMHIFSDYVKHEGHEITLRVLYRLFG
EAEEDRDFFSSTTATSVYETFLLHVSETLRDSFPASDKSLNRLLGEVPYLPNSIFKLLEC
LCSPGCNADDKELHGGDRVIQGLSIVWSLILLRPPIRDATLKLALKSAVHHLEEVRMKAI
RLVANKLYPLSFISEKIEDFAKEMLLSVANDNQTVGTNEADVMQLLMDEKISSENQPTGT
KINNIAADTQHVAASASGQSSAVAEVQRCMSLFFALCTKKHSLIRQIFDVYKSMSEVAKQ
TVHHQLPLLVRTIGSSHELLDIMSDFPSGSEELLMQAVQTLTDGTIPSPELLATIRRLYD
TKIKDVDILIPILPFLPKNEVVRIFPYLVNAPPDKFQVALSRVIQGLNNSGPVLTPAESL
IAIHGIDPERDGIPLKKVTDACNVCFEQRDIFSQQVLAKVLNQLVEQIPLPLLFMRTVLQ
AIGAFPSLVEFIMEILSRLVSKQIWKYPKLWVGFMKCALLTKPQSFGVLLQLPPAQLENA
LNRTPALKSPLVAHANQPHIKSSLPRSSLVVLGIASDAQASSQQKPTQSKSVENGNSDKE
AVTDMSKEPST
NT seq
3996 nt
NT seq
+upstream
nt +downstream
nt
atggtgggcaaaaggacgggttcgatttcgcgagcgaagatttcgggtcgaataaaatca
gtaaagtacggaggttcgggggacattgcatcaaagctcaaccagctgcggcggctccga
gaggagctgtgtggcgtggactctgttttgtttgaggagttcctctaccctctccttgac
ctcctttctgatagtttcagccccgttcggaaatccatcactgagatagttggccaaatt
ggattgaagcacgcagagttcttgcctgaaattgtaccggcactgataaatattctgaag
gatgatgtacctgctgttgctcgccaggctatcacatgtgccattgatatatttcggtgt
actctcatcaaagttgtgatccagggcttgtactcaagtgagtttgatgaatcacttaaa
tcatcttgggaatatgtactaaagttaagagatgagatatactcattggcgtttaaggtg
ggaagtgatgggagaaggttgcccgcattgaagtttgtcgaatcagttgttttactttac
tcacctgaccctaatggttctttggaaccttcctctgatcaagtttctgaagaggaattc
aatgtctcgtggcttcgtggaggccatcctatacttaatgttggagatctgtcgcttgaa
gcaagtaaaagtgtgggtaaactgcttgatcaactgagactccctgctgtgaaatcagtt
agtaatctaatgattatcgtattgatcaaaagtctttcaacagttgcaaggaaaaggcca
gctttttatggtcgaatattgccagttttactcggtttggatccttcagtctctgctagc
gaagactttcatatttctgggtcgcgtcatgctttgaagaatgcttttgaatgttgtttg
aattgtacacactccggtgctgttccgtggcgggaccgtcttcttagtgcactcagcgaa
atggaacttggaaaagcatctgaacaagaatgggacctaatgcgtgagaataatggaaca
atagacttgaaagatgattcacatatttctcagacccatgaggatggtaaatcttctgac
ggagcacttgccattgaacagagttatgcagggaggaaaagacccggattgcacgacggt
tcagattttactcaggataatatgtctggaaaacgtgtaaaatcaacagttggcattata
gacggatcagtccatgatccaaaagggaatcaggtgaatgtcccttcagttgggcgagca
tcatcccatacagctgcagagagcggaccagttccacagcttgttgctatgtttagtgta
ttggttgctcagggtgaaaaggcagctgcatctttggagattctcatttcgagcatatca
gctgacttgctagctgacgtagttatggctaacatccgtaatcttcctcccatataccct
aaatctgaaggagatgaagtcccacttctggatataggtcctcctcctggtgttgaacat
gatgcccatataaaaaatttgtccttgttattgacagaaatactttcacatccaagctct
tcccaactgaaagaagataaaactggatctcatcatcattcaggtttaagagagcttgag
catgctcaagaagaagaggtaacacaggctactgtgggtgacggaaatgttgcatatgac
ggcctagatttttctagacaacaagcatcagtatctactggtgaatctggttcttgtgaa
gatattccatctggaattcatactggtaattcagccataaaatctgaagtcaccgatgcc
aaacttcaggaggaagaaatacccagtctttctttgtccactcaggatggcagaattgat
gaaaatttaaccgctcttttatcaaattctaccaatttagaggatgctaataatgacaaa
gccactaattttggtaattctcctgtagaattggctcaatctttgtcaactgataggtct
gaggagcttagccctaaagtggctgtaacagattcaactagcatcaattcctcaatgcca
acttctctcgggatgatcgcacagttggttttccccaagataacagcacctgtcattgtc
cttgtcgatgaacagaaggatcagctacaagagcttgcttttttgcgcattattgatgct
tataagcaagttacagctgctggaggatggcaactgcgtgtttctattcttgcacactca
ggaattgagtttccttcagagttagatccatggaagtcgctaaagatgcatatattttca
gactatgtaaaacatgaggggcacgagataacattgcgcgtcctctacaggctatttggt
gaggcagaagaagaccgtgactttttttcttctacaaccgctacatctgtttacgaaact
tttcttctccacgtgtcagaaacgctaagggattcttttcctgcttctgacaaatctcta
aatagattgcttggggaagttccttatttaccaaattcaatttttaaattgttggaatgc
ttgtgttcgcctggatgcaatgcagatgataaagagttacatggtggagatcgagttatc
cagggcctcagtatcgtgtggagcctgattttactgagacctcctatccgagatgctacc
ctcaaacttgctttgaagagtgctgttcatcaccttgaagaagtacgcatgaaggcaata
cgtctggtggccaataaactttatcctttatcattcatatctgaaaaaattgaagatttt
gccaaggaaatgttgctgtcagttgccaatgacaatcaaacagttggtacgaatgaggct
gatgttatgcagttgctgatggatgaaaagatatcaagtgagaatcaaccaacgggaacg
aaaataaataacattgctgctgacactcagcacgtggctgcatctgcaagcggccaatct
tctgctgtagctgaagtgcaacggtgcatgtctctattttttgccctctgcacaaagaag
cactcccttattcgtcaaatatttgatgtttataaaagcatgtccgaggtggcaaagcag
acagttcatcaccaactcccattgcttgttcgaacaattggttcatcccatgagctcctt
gatattatgtcagactttccatctggaagcgaagaacttttgatgcaggctgtgcagaca
cttaccgatggaacaattccttctccagagttattagctaccatacgaaggttatatgat
acaaaaattaaggatgtagacattcttattccgatactgcctttcctgcctaaaaatgag
gttgtgcggatttttccatatcttgtgaatgctccaccggataagtttcaagtcgctctc
tctcgagttattcaggggttaaataactctggtccagtgttgactccagctgaatcgtta
attgccatccatgggattgatcctgagagggatgggattcctttgaagaaggtcacagat
gcttgtaacgtttgttttgagcagcgagacatattctctcagcaagttctagccaaggtc
ttgaatcaattggttgagcaaattcctctacccttattgtttatgcggacagtactgcag
gccataggggcttttccttctctggtagaattcataatggagattctttctcgtcttgtt
agcaagcagatatggaaatacccgaaactgtgggtaggattcatgaagtgtgctcttttg
acaaagccacaatcctttggtgtgctgcttcagctacctccggcgcagcttgaaaatgcg
ctgaacagaacacctgctctcaagtctcctttggttgcccatgcaaaccaaccacacata
aaatcctcacttccaaggtcctcgctggtggttcttggcattgcatcagatgctcaagca
tctagtcaacaaaaaccaactcagagcaagtctgtagaaaatgggaattcagacaaggaa
gcagtgacggatatgtcaaaggaaccatcaacttga
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