Primulina tabacum: 142551863
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Entry
142551863 CDS
T11246
Name
(RefSeq) putative CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
ptab Primulina tabacum
Pathway
ptab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142551863
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142551863
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
142551863
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
142551863
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
142551863
NCBI-ProteinID:
XP_075517429
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All DBs
Position
7:38839302..38841016
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AA seq
311 aa
AA seq
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MPTMSYLASGLPAPPHRSLPSPTLNVPQQPSSLEIVFKNCKKPILIRSVWSSNLESEFCI
IRGIIDCFPVVSMDTEFPGVVFQHRPCYPNSIDHYHTLKSNVDALKLIQVGITLSDSSGN
FPDLGSPHHCFVWEFNFRDFDIAHDDHAPTSIDLLRHQGIDFVRNRQLGVCTYRFAQLMM
TSGLICNENVTYITFHSGYDFGYLIKVLTGKNLPGTLAEFLNCLMVFFGNNVYDVKHLMK
FCQGLHGGLDRVAQSLGVERAAGCCHQAGSDSLLTWQAFEKIRSVYFSNLVNGEFPVKYA
GVLYGLEILGP
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atgcccacaatgtcgtacttagcctccggcctaccagcgccgccacaccgatccttgcca
tcgccgactctcaatgtccctcaacagccaagttctttggagatcgttttcaaaaactgt
aaaaagcctatcttgattcgatcagtctggtccagtaacttggagtccgaattttgcatc
attcgtggcatcattgactgtttccctgtcgtttcaatggacactgagtttcccggcgtc
gtgtttcagcaccgcccctgttatccaaattccatcgatcactaccacactctgaagtcg
aatgttgacgcgctcaagcttattcaggtcgggatcacgctttcagattcctctggcaac
ttccctgaccttggaagtccccatcattgcttcgtctgggagtttaattttcgcgatttt
gatattgctcatgatgaccacgcgccgacctccattgatcttctacgtcaccagggaata
gacttcgtgcgcaatcggcagctaggtgtgtgtacgtatcgctttgcccagcttatgatg
acttctggactgatttgcaatgaaaatgttacttacataacctttcacagtggctacgat
ttcggttacctcatcaaggttttaacggggaagaacctgccggggacccttgctgaattt
ctgaattgtctgatggtcttttttgggaacaatgtttatgatgtgaaacacttgatgaaa
ttctgccagggacttcatgggggtttggatagggtggcacagtcgcttggggtggagcgt
gctgcagggtgttgccaccaggctggttcagatagcctgcttacgtggcaggcgtttgag
aagatcagaagtgtctactttagcaatctagtaaatggtgaatttcctgtaaagtatgct
ggtgttctctatgggttagagattcttggcccttga
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