Primulina tabacum: 142552099
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Entry
142552099 CDS
T11246
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
ptab Primulina tabacum
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142552099
03041 Spliceosome [BR:
ptab03041
]
142552099
03036 Chromosome and associated proteins [BR:
ptab03036
]
142552099
Enzymes [BR:
ptab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
142552099
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
142552099
mRNA cycle factors
Common to processing body (P body) and stress granule
142552099
Spliceosome [BR:
ptab03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
142552099
Chromosome and associated proteins [BR:
ptab03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
142552099
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
142552099
NCBI-ProteinID:
XP_075517837
LinkDB
All DBs
Position
7:complement(40500970..40506591)
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AA seq
601 aa
AA seq
DB search
MRTSWADAVENAASGFSDDAGTSGGNGPTSAPTKPAYVPPHLRNKPPASSLSGGASSGND
RSGYSGSTSGSRQAGSGSDYGLQGYNYGSRGGSGRGNRDREVNPFGNEDLDADTERAFVE
LENSGINFDAYEDIPVETSGEDVPPPVNTFAEIDLGDALNLNIRRCKYVKPTPVQRHAIP
ISLAGRDLMACAQTGSGKTAAFCFPIIGGIMRGQSPMRPRGVRTVFPLALILSPTRELSM
QIHEEARKFSYQTGVRVVVVYGGAPINQQLRELERGVEILVATPGRLFDLLERAKVSLQM
IKYLALDEADRMLDMGFEPQIRKIVEQMDMPPRGERQTMLFSATFPKEIQRLASDFLSNY
IFLAVGRVGSSTDLIVQRVEFVHDNDKRSHLMDLIHGQRANGVQGKQALTLVFVETKKGA
DSLEHWLCANGFPATTIHGDRTQQERELALRSFKSGNTPILVATDVAARGLDIPHVAHVI
NFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNENNTSLSKALADLMHEANQEVPDWLTRF
ASRPLYGGKSRRGGGRFGGRDFRRESSFNRSGSGSNYYGGGGSGGFGSYGGGGPGVTSAW
D
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgagaacttcatgggcagatgccgttgagaatgcagcttctggattttctgatgatgct
gggaccagtggaggcaatggacccacatcggctcccactaagcctgcatatgtcccacca
catctcaggaacaaacctcctgcttcatccctgagtggtggtgcatcatcgggtaatgac
aggtccgggtatagtggatcaacaagtggatcacgacaggctggctctggatctgattac
ggacttcagggatataattatggaagccgtggaggtagtggccggggtaacagggaccga
gaggtcaacccttttggtaatgaagatctggatgcagacactgaacgtgcatttgttgaa
ctggagaatagtggtattaactttgatgcatacgaggatattcctgtggagacaagcggt
gaagatgtaccaccacccgtaaatacatttgcggagatagatttaggtgatgctctcaat
ttgaatattcgaaggtgtaagtatgtgaaaccaaccccagtgcagcgacatgctataccg
atttcactggcaggacgagatttgatggcctgtgctcaaaccggatcaggaaagactgct
gctttttgcttcccaatcatcggtggaattatgaggggacagtctccaatgagaccgcgt
ggtgtccgcactgtttttccacttgcacttattctctcaccaactagagaactctcaatg
cagatacatgaagaagctagaaagttttcctaccaaactggcgtcagagtagttgtggta
tatggaggagcgccaataaatcaacagctgcgtgaacttgagagaggagttgaaattctg
gtggcaacacctggaagattgtttgatttgcttgagagagcaaaagtttcattacagatg
ataaaatatttggctcttgatgaggcagacagaatgcttgatatgggttttgagccgcaa
atcagaaaaattgtagagcaaatggatatgcctcctcgtggtgaaagacagacaatgcta
tttagtgccacctttccaaaagagatccagagactggcatccgacttcctttcaaattac
atatttttggcagttggaagggttggttcaagtacagatttgattgttcaaagagttgaa
tttgttcatgataatgacaagagaagccatttgatggatcttattcatggtcagagggcg
aacggagttcaaggaaagcaagctcttactttagtatttgtggaaacgaagaaaggagct
gattcattggaacattggctgtgtgccaatggttttcctgccactacaattcatggagat
agaacacaacaggaaagggagctagcactcagatccttcaagagtgggaacacgccaata
ttagttgcaacagatgtggctgctcgtggtcttgatattccacatgttgctcatgtaatc
aacttcgatctcccaaatgacatagatgattatgtccatcggataggacgtacgggtcgt
gctgggaagacgggattggcaactgccttcttcaacgaaaataacacgtcgttgtctaag
gcattggctgatttgatgcacgaagcaaatcaagaagtgccggattggttgactcggttt
gcaagtcgacccctgtatgggggtaaaagtaggcgtggtggtgggcgttttggtggtcgt
gattttagaagagagtcctcttttaatcggtctgggagtggctctaactactatggagga
ggcggcagtggtggttttggcagttacggaggaggaggtccgggcgtgaccagtgcatgg
gattaa
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