Primulina tabacum: 142552761
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Entry
142552761 CDS
T11246
Name
(RefSeq) protein PAT1 homolog 2-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ptab Primulina tabacum
Pathway
ptab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142552761
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142552761
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
142552761
mRNA degradation factors
5'-3' decay
Decapping complex
142552761
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
142552761
NCBI-ProteinID:
XP_075518680
LinkDB
All DBs
Position
8:1524374..1529974
Genome browser
AA seq
819 aa
AA seq
DB search
MERSGEKDSTDFSDPSSSSISDSALFDASQYAFFGNDVVGDVQIGGLEDEEVGVPVIGGG
FGGDVELHEYHLFDKNEGSGFGSLSDMDDLATTFAKLNKVVSGPRHPGVIGDRGSGSGSF
SRESSSATEWARETDFPDWLDSHMSDSECYEDNKRWSSHPRLSSIYHLEPKPLYRTSSYP
EQQPQQLQHYNSEPILVPESSFTSFPPPVSQQALSSSSHHLNLSSLSGGTQSPLSVLNNS
SLSNRSLSVGGMPRGFHNNISNMPLLASPNISCNAHLQNHWSSHAGLLHGDNLILLNDVL
QLQYQNGLLPSQMMSPQQQRLRFSFQPSLAHFSATQSRLYNTFPSPSPFSKSGSIDKREL
KSKLAQKGRHTVRFSDQGYDASSQKSGSNIPHFRSKHMAAEEIESILKLQLAATHGNDLY
VDDYYHQASIAKKSSETRSKYRFCPSHPKEQSSRSRNNSESQPHLHVDVLGRVCFSSVRR
PRPLLEVDPPPVACGDVSADQKLSEKTLEQETMLAARVTIEDGLCLLLDVDDIDRILQFS
QPHDGGNQLRRKRHTLLEGLAASLQLVDPLGRGGNSVGLSPKDDTVFLRLVSLSKGRKLI
SRFLQLLLPGSELARIVCMAVFRHLRFLFGKFPSDSEAVITVNKLAETVSTCVNGMDLNS
ISACLAAVVCSLEQPPLRPVGSPAGDGASVILKCVLERATQLLRDPYSTSNFSIPNPTLW
QASFDAFFGLLTKYCVNKYDGIVQSLISQNPPHTLVIDSEAANAINKEMPVELLRASLPH
TDENQKKLLLNFAQRSMPVTGFSTHGGSSSQINPESVKG
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atggagagatccggtgaaaaagattctactgacttctccgacccttcaagcagctccatt
tctgatagcgcgctgtttgatgcgtctcagtatgccttttttggaaacgatgtagtcggt
gatgtgcaaatagggggtttggaagatgaagaagttggtgttccagtgattggaggtgga
tttggtggtgatgtggagttgcacgagtatcatctttttgataaaaatgagggatcagga
tttggatccttatctgatatggatgatttggctactacatttgccaagttgaacaaagtt
gtttccggaccaagacacccaggagttatcggtgatcggggatctggatctggatcattt
tcaagggagagttcatctgctacagaatgggcacgtgagactgattttcctgattggctt
gacagtcatatgtctgactcggaatgttatgaggataataagagatggtcctcgcatcct
cgtctctcttcaatatatcatctggaaccaaaaccattgtacagaacatcgtcctaccct
gagcagcagcctcagcagctgcaacactataatagcgagcctattttagtacctgagtca
tctttcacttccttccctccaccagtatctcaacaagctctgtcaagtagttcacatcac
ctgaatttgtcatctttatctggtggaacacagtcacccctctctgtgttaaacaactct
tcattgtctaaccgttctctctctgttgggggtatgccaagagggttccataataatatt
tcaaacatgcccctcctagcctcaccaaatatatcatgtaatgcacatctgcaaaaccac
tggagtagccatgctggtcttcttcatggggataatttgatcctcttaaatgatgtttta
cagcttcagtatcaaaatggactattaccatctcagatgatgtctccacagcagcagaga
ttacggttttcatttcaaccatcattggcccatttttctgctacgcaatctcgattatat
aacacctttccttcaccatcaccctttagtaaatctggttccattgataagagggagtta
aaatctaagctagcacaaaaaggtaggcatacagtgcgattctctgatcaaggatatgat
gctagtagtcaaaaaagtggcagtaacattccacatttcagatcaaagcacatggctgcc
gaagaaatagagagcattcttaaattgcagcttgctgcaacccatggtaatgatctgtac
gtggatgattattaccaccaagctagtattgctaagaaatcttctgaaacaagatcgaaa
tatcgattctgtccatctcacccgaaggagcaatcttcccggtctcgtaacaattctgag
tcacaaccacatctccatgtggatgttcttggacgggtatgcttttcttcggttcgccgg
cctcgtccgcttcttgaagttgaccctcctcccgttgcttgtggtgatgtaagtgcggat
cagaaattatctgaaaagactttggaacaggaaacaatgcttgcagcaagggtgacaatt
gaggatggcctatgtcttcttttggatgtggatgatattgacaggatcttacagttttct
caaccccatgatggtggaaatcagctcaggcgaaagcgccacactctgctagaaggctta
gcagcctctcttcagctcgttgacccacttggaagaggtggcaattccgttgggctgtct
cccaaggacgataccgtgtttcttcgtttggtttctctatccaaaggccgaaaacttatc
tccaggtttcttcaacttcttttaccaggaagtgagcttgctcgaatagtctgcatggcc
gttttccgccatttaagatttctgttcggaaaatttccctctgattcggaagctgttatt
accgtcaacaaacttgctgagacggtctctacttgtgttaatggcatggatcttaattca
atcagtgcttgtcttgctgccgttgtttgttccttggaacagccacctcttcgtccagta
ggcagccctgctggtgatggtgcttcagtcatcttgaagtgtgttcttgaaagagcgact
cagttgttaagagatccttattcgaccagcaacttcagtataccgaatcctaccctatgg
caggcttcatttgatgccttcttcggtctgctgacaaagtactgtgtgaataaatatgat
ggcatcgtgcaatcattaatctctcaaaatcctccacacacgctggtaattgattcagaa
gctgcaaatgctataaacaaggagatgcctgttgaacttttacgtgctagtctcccacac
actgacgagaatcagaagaaactgttactgaattttgctcagcgatccatgcctgttact
ggatttagcactcatggcggaagtagcagccaaataaatcccgaatcagtcaaaggttag
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