Primulina tabacum: 142553271
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Entry
142553271 CDS
T11246
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH14
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
ptab Primulina tabacum
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptab03400
]
142553271
Enzymes [BR:
ptab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
142553271
DNA repair and recombination proteins [BR:
ptab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
142553271
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
DEAD
WHD_SNRNP200
DExH14_plug
ResIII
Helicase_C
AAA_22
AAA_30
AAA_19
DEXQc_Suv3
Peptidase_M13_N
TANGO2
ASCC3_N
Motif
Other DBs
NCBI-GeneID:
142553271
NCBI-ProteinID:
XP_075519521
LinkDB
All DBs
Position
8:5401048..5441062
Genome browser
AA seq
2085 aa
AA seq
DB search
MLVDLPRLTNSLRLPFDVDQAYLNRKSVLRSLKNSSSAALHGEWELARKIVYRWDEASAE
VRQAYKQYIAAVVELMGGEVVSEEFHEVALYIYHLFEVTSDNKEGGSCESFSDKKFELEN
FFGHAVPDANLQKVASLVDRLSGSQKNEQKTMNIPESTSVGDKELEFGADLAFQPPARFL
VDFALERGEITLDDETSTPFSQPEGWSDYGGSESFHPVNEGNFDLEWLRDACDRIVSEST
SHFPQDELAMTICQVLDSEKPGDEIAGDLLDLVGDGSFEIVQDLIMHRKELVDSIHRGLI
VLKSDKSASSMQPRMPSYATQVTVQTESERQIDKLRRKEDKKNRRGTDHGMENDFSSLTF
SSLLQASEKKSLVDDLVGYGDGPQLAATALPQGTARKHYKGYEEVTIPATPTAPMKPGEK
LIEIKELDDFAQAAFHGYKSLNRIQSRIYQKAFFSNENILVCAPTGAGKTNIAMISILHE
IGQHLRDGYLHKDEFKIVYVAPMKALAAEVTSAFSHRLSPLNITVRELTGDMQLSKNELE
ETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVES
TQSMIRIVGLSATLPNYMEVAQFLRVNSDTGLFFFDSSYRPVPLEQQYIGISEPNFVARK
ELMNEICYKKVVDSIRRGHQVMVFVHSRKDTGKTAENLVEMAKRYEDFELFSNTSHPQSG
LIKKEVLKSRNKELVQLFDYAIGIHHAGMLRVDRGLTERLFSGGLLKVLVCTATLAWGVN
LPAHTVVIKGTQIYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYYL
RLLTSQLPIESQFINSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMKMNPLAYGIGW
DEVLADPSLSLKQRSLVSDSARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVET
YNEMLKRHMSDSEVIDMIAHSSEFENIVVREEEQNELELMTRKCPLEVKGGPSNKHGKVS
ILIQLYISRGSIDTFSLVSDAAYISSSLARVMRALFEICLCRGWSEMSSFMLEYCKAVDR
QIWPHQHPLRQFDKDISVEILRKLEEREVDLDRLYEMQEKDIGALIRYAPGGKLVKQYLG
YFPMVQLFATVSPITRTVLKVDLIITPEFVWKDRFHGTVQRWWILVEDSENDHIYHSELF
SLTKRMAKGEPQKLSFTVPIFEPHPPQYIIRAISDSWLHAEAFYIISIQNLALPEAHTTH
TELLDLKPLPVTALSCRTYEALYDFSHFNPIQTQAFHVLYHTDQNVLLGAPTGSGKTISA
ELAMLHLFNTQPDMKVIYIAPLKALVRERMNDWRKRLVSKLGKHMVEMTGDYTPDLTALL
STDIIISTPEKWDGISRNWHSRGYVKKVGLMILDEIHLLGADRGPILEVIVSRMRYISSQ
TDRPVRFVGLSTALANAHDLADWLGVEENGLFNFKPSVRPVPLEVHIQGYPGKYYCPRMN
SMNKPTYAAICTHSPIKPVLIFVSSRRQTRLTALDLIQFAASDERPRQFLAIPEEALQMI
LSQVADQNLRHTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHL
VVIKGTEYFDAKAKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYE
PFPVESSLREQLHDHINAEIVSGTICHKEDAVHYLTWTYLFRRLAVNPAYYGLEDTDSGT
LSSYLSRLMLNTFEDLEDSGCIKIDEDKVEPLMLGSIASQYYLKYTTVSMFASNIGADTS
LEVFLHILAGASEYDELPVRHNEENHNADLSKKVRFMVDQNLLDDPHVKANLLFQAHFSR
VELPVTDYVTDLKSVLDQCIRIIQAMIDLCANSGWFSSTMTCMRLLQMVMQGLWFDTDSP
LWMLPCMTDDLITTLSQRGILNVLQLLYLPKANLQSLTGSSIASKLHEELQQFPRIQARI
KVQRRRSDDSCDSLNIRLEKTHPQKNSARAFTPRFPKVKDEAWWLVLGNTSTSELYALKR
VSFTNVLHTRMDVPLSVNDFQGMKLVVVSDCYIGFEHEYSVETLL
NT seq
6258 nt
NT seq
+upstream
nt +downstream
nt
atgttggtcgatctcccgcgcttaaccaattcacttcgactgccgtttgatgttgaccaa
gcttatctcaatcgaaaatccgttctcagaagcctcaagaactctagttccgcggctttg
catggagagtgggagcttgctcgtaagattgtgtatcgatgggacgaagcatctgctgaa
gtacgacaagcatacaaacaatatattgctgcagtcgttgagttgatgggcggtgaggtg
gtgtcagaggaatttcatgaagtggcattgtatatttatcatctatttgaagtcacctct
gacaacaaagagggtgggagctgcgagagtttttctgataaaaagttcgaattggaaaat
ttttttggccacgctgttccggatgcaaatttacaaaaagttgcatccctggtagataga
ctttctggttcacagaagaatgagcagaagaccatgaatattccagaatcgacgagtgta
ggtgacaaggagttggaatttggtgcagaccttgctttccaacctccagcccggtttcta
gttgattttgccttggagcgtggagaaatcacactggatgatgaaactagcacgcctttt
tctcaacctgagggatggtctgattatggtggttcagaaagcttccatcccgttaatgaa
ggtaactttgatctagaatggttgcgggatgcatgtgacagaattgttagtgaaagcact
tcacatttccctcaagatgaactggcaatgaccatttgccaggttcttgactcagagaaa
ccaggtgatgagatagctggtgatttactggatcttgttggtgatggctcatttgaaatt
gttcaagaccttatcatgcatagaaaagaacttgttgatagtattcatcgtggacttatt
gtactcaaatccgacaaatcagcctcaagcatgcaaccacggatgcctagttacgctact
caggtaactgtacaaacagagtccgaacgacaaattgataaacttcgtcgcaaggaggac
aaaaagaataggcgcgggactgatcatgggatggagaatgatttttcttctctgacattt
agttccctacttcaagcaagtgagaagaaaagtcttgttgatgatcttgtgggatacggt
gatgggcctcagcttgctgcgactgcccttcctcagggcacggcgagaaagcattataag
ggatacgaagaagtcactattcctgccacgcctactgcaccgatgaaacctggggagaag
ctgattgaaataaaggagttagatgattttgcacaagctgctttccatggctacaaatct
ttgaatcgcatccagagcagaatataccaaaaagctttcttcagtaatgaaaatatactg
gtctgtgctccaactggagctgggaaaaccaatatagccatgatatctattttgcatgag
ataggacaacacttaagagatggctatttgcacaaggatgaatttaagattgtttatgtt
gctcccatgaaggcattagctgcagaggttacatcagcgttcagtcatcgcttgtctcca
ctgaatataaccgtgagagaacttactggtgacatgcaactttctaaaaatgaactggaa
gaaactcagatgattgtgacaacacctgaaaaatgggatgttatcactcgtaaaagtagt
gatatgtctctgtctatgctggtgaagctcctaatcattgatgaagtacatctcttgaat
gatgataggggtcctgtaattgaggcgttagtagctcgcactcttcgtcaggtagagtcg
acacaaagtatgattcgtatagtgggactctctgccactctaccgaattatatggaggtt
gctcagtttttaagggtaaattcagatactggtctattcttctttgattcaagctaccgc
ccagttcctctggagcagcaatatattggtatttctgaaccgaattttgtagctcgtaag
gaattgatgaatgagatatgctacaagaaggttgttgattcaataaggcgaggacatcag
gttatggtttttgttcattcacggaaagatactggaaaaaccgctgaaaacctggttgaa
atggccaagagatacgaggatttcgagcttttttcaaacacctctcatccacaatcagga
cttattaagaaagaagttctgaagtccaggaataaggagctggtccaactctttgactat
gctattggcatccatcatgctgggatgttgcgtgttgacagaggactgactgagcggctc
ttctctggtggacttttaaaggtccttgtttgcacagcaactttggcatggggagtaaat
ctgccagctcatacagttgtgattaagggaacacaaatatatgacccaaaggctggtggg
tggagagatctgggcatgcttgatgttatgcagatatttgggcgtgctgggaggccgcag
ttcgataaaagtggtgaaggaattataatcacaagccatgacaaactagcttattatttg
cgacttttgaccagtcaacttcccatcgagagtcagtttattaattccttaaaagataat
ttaaatgcggaggtggcactaggcactgtaacaaatgttaaagaagcctgtgcttggctt
gggtatacatatcttttcataaggatgaaaatgaatcctttggcatatggcattggatgg
gatgaggtacttgctgatccttcgctgagtctaaagcaaagatctctggtctctgattct
gcacgtgctcttgataaggcaaaaatgatgcgcttcgatgagaagagtggaaatttttat
tgtaccgagcttggtcgtatagcaagccacttttatatccaatactctagtgttgaaact
tataatgaaatgttgaaacgccacatgagtgatagcgaggtgatcgacatgattgcccat
tcttctgaatttgaaaatattgttgttcgagaggaggaacaaaatgagcttgaattgatg
actcgcaaatgtcctttagaagttaagggtggtccatcaaataaacatgggaaagtttcg
attcttatacagttgtacatatccaggggttcaatcgatactttctcactagtttcggat
gcagcatatattagttcaagcttggctcgtgttatgcgggccttatttgagatttgtttg
tgtagagggtggagtgagatgtcttctttcatgttagagtactgcaaggccgtggatcgt
caaatttggccccaccaacatcctctcagacaatttgacaaagatatttctgtggaaatt
ctaaggaagcttgaggaaagagaagtggacctagatcgcctatatgagatgcaggagaaa
gacataggagctttgattcgctatgctcctggagggaagttggtcaaacaatacttggga
tatttcccaatggtccagttatttgctaccgttagtccaatcacaagaactgttctgaag
gttgatttgattattacccctgagtttgtctggaaagatcggtttcatggtactgtacaa
cgctggtggattttagtggaggattctgagaatgatcatatatatcactcagagctcttt
tcattaacaaagcgcatggccaaaggggaacctcagaaactatctttcacagttcctatc
tttgagccacaccctcctcagtacatcattcgtgcaatttccgattcgtggttgcatgca
gaggctttctacattatatcaatccagaaccttgcactgccagaggcacatactactcat
accgaactccttgatctgaaaccccttcctgtgaccgcacttagctgtagaacctatgaa
gcattgtatgacttttcacactttaaccccatacagacgcaggctttccatgtgctgtat
cacacagatcaaaatgttcttttgggagctccaacaggaagtggtaaaaccatatcagct
gagcttgctatgcttcatctgtttaatactcaaccggatatgaaggttatctatatagca
cctttaaaggctcttgttcgagaaagaatgaatgattggaggaagcgtcttgtttccaaa
cttggaaaacatatggttgagatgactggtgattataccccagatttgacagctctttta
tctacagacatcataatatctactcccgaaaagtgggatggcatcagtcgtaactggcac
agtcgaggttatgtcaagaaggttgggctcatgatattggatgagattcacttgcttggt
gctgatcgtggacccatactggaggttattgtctcccggatgagatatatatcatcacag
acagatcgtccggttcgatttgttggcctttcaacagcattggcaaatgcacatgattta
gctgattggctgggtgttgaagaaaatggtcttttcaattttaagcctagtgttagacct
gttcctcttgaagttcatatacagggatatcctgggaagtattactgtccaagaatgaat
agcatgaataagcccacatatgctgctatatgtacacattcacccataaaaccagttctt
atatttgtttcatcacgtcgccagacaagactgactgcacttgaccttattcagtttgca
gcttcagatgagcgcccaagacagttcctggctatacctgaagaagcacttcagatgata
ctttctcaagttgctgatcagaatctcaggcatactctgcagtttggcattgggttgcac
catgctgggctgaatgataaagacagatctcttgttgaggaactttttgcaaacaacaaa
attcaggtgttggtttgcaccagtacattagcatggggtgtgaaccttccagctcattta
gttgttataaagggaacagaatattttgatgcaaaagcaaagagatatgttgattttcca
ataacagatattttacaaatgatgggtcgagcaggtcggcctcagtacgatcaacatggg
aaggcagttattctggttcatgaacctaaaaagagcttctacaaaaagtttctctacgaa
ccatttccagttgaaagcagcctgagagagcagttgcatgatcacatcaatgctgagatc
gtctctggaacaatttgtcacaaagaggatgcagtacattatcttacatggacctatttg
ttccgcagactggcggttaatccagcttattatgggttagaggatacagattctggaact
ttaagttcttacttgtcaaggttaatgctgaacacatttgaggatcttgaagacagtggt
tgcatcaagattgatgaagacaaggttgagccgctgatgttggggtcaattgcatctcag
tattatcttaaatacacgactgtatcaatgtttgcttcaaatataggagcagacacgtcg
cttgaagttttcctccacatattagctggtgcttctgaatatgatgagcttcctgtgcgc
cataatgaagaaaatcacaatgccgacttgtccaaaaaagttcgattcatggtcgatcaa
aatcttcttgatgatccacatgttaaagcaaatcttcttttccaggctcatttttcccga
gttgaactacctgtcaccgactatgtaacagacttgaagtcagtgctagatcagtgtatt
cgtatcattcaggcgatgatagatctgtgtgctaacagtggatggttctctagtaccatg
acttgtatgcgtcttttgcaaatggtcatgcagggactatggtttgacacagattctccc
ctgtggatgttaccatgcatgactgatgatcttattactacattgagccagagaggaatc
ttaaatgtcctgcaattattgtatcttcccaaagcaaatcttcaatctctcactggaagt
tcaattgcctcaaagttacacgaggaactacagcagtttcctcgtattcaagctcggata
aaagttcagagacgacgttctgacgattcttgcgatagtctgaacataagattggagaaa
acacacccccagaagaactcagcaagggcttttactcctcgcttcccaaaggtaaaagac
gaagcatggtggttggtcctgggaaatacttctacttctgaactgtatgcgttgaagaga
gtttctttcactaatgttttgcatacacggatggatgttcctctgagtgttaatgacttc
cagggtatgaagttggttgtagtttcagactgttatattggtttcgaacatgaatactct
gttgaaacgctgctatga
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integrated database retrieval system
