Primulina tabacum: 142553740
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Entry
142553740 CDS
T11246
Name
(RefSeq) THO complex subunit 1 isoform X1
KO
K12878
THO complex subunit 1
Organism
ptab Primulina tabacum
Pathway
ptab03013
Nucleocytoplasmic transport
ptab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142553740
09122 Translation
03013 Nucleocytoplasmic transport
142553740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142553740
03041 Spliceosome [BR:
ptab03041
]
142553740
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
142553740
Spliceosome [BR:
ptab03041
]
Complex C
Other components
EJC/TREX
142553740
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
142553740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Mitoc_mL59
Motif
Other DBs
NCBI-GeneID:
142553740
NCBI-ProteinID:
XP_075520315
LinkDB
All DBs
Position
8:11305210..11317016
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AA seq
627 aa
AA seq
DB search
MEKFASDLFRKAILNPAPPQDFALQTVQQAIKPQKQMKLVQDENQLLENILRSLLQELVS
AAVQSGEEIMQYGKLIDGEDSNQGQIPRLLDIVLYLCEKDHVEGGMIFQLLEDLTEMSTM
RNCKDTFGYIESKQDILGKPELFARGKLVMLRTCNQLLRRLSKANDVVFCGRIIMFLAHF
FPLSERSAVNIKGVFNTSNETKYEKEAPDGSSIDFNFYKTFWSLQDFFSNPASLTPVITK
WHKFASSLTVVLNTFEAQPLNDEEDNSIDLDEGASNFSIKYLTSSKLMGLELKDPSFRRH
ILVQCLILFDYLKAPGKNDKDLPSDAMKEEMKTCEERVKKLLEMTPPRGKDFLHSIEHIL
EREKNWVWWKRDGCPPFEKQPIEKKLAQDGGRKRRPRWRLGNKELSQLWKWADQNPNALT
DPLRVRTPDIMDYWKGLADDMDEAAGIEAEYHHKNNRVYCWKGLRFSARQDLEGFSKFTE
HGVEGVVPLELLTPEVRSKYQAKSGDRSKRAKKEEAKNSLQQTESTQIETHTSETDVEGT
RDDPEASVTLMDADATIASGNLSQGGTPTPDEMPKQNWDTDGGQELGQIEADTEVEMGMI
DGDMDAEVDLDCHGMTSHVCSHICFFS
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atggagaagtttgcatcggatttattcaggaaagcaatactgaatccggctccgcctcag
gatttcgctcttcagacagtgcaacaagctataaaaccccagaagcaaatgaaactggtt
caggatgaaaatcagcttttggaaaatatcctccggtctttgcttcaggagctggtgtca
gccgccgttcagtcaggcgaggaaatcatgcaatatggaaaattgatcgatggtgaagat
agcaatcagggtcaaattcctcgccttcttgatattgttttgtatctttgtgagaaagac
cacgtcgaaggtggcatgatatttcagctcctagaagatttgacagaaatgtctacaatg
agaaactgtaaagatacatttgggtatatagagagtaaacaagacattcttgggaagcca
gagctttttgcaagagggaagcttgtaatgctgagaacgtgcaatcaactccttcgccga
ttatcgaaggcaaatgatgttgtcttctgtggacgaattataatgtttcttgcccatttt
tttcctttatcggaacgatctgctgtcaatattaaaggagttttcaatacatcaaatgag
acaaaatatgagaaagaagctccagatggtagttctattgatttcaacttttacaaaacc
ttttggagtttacaggacttcttttccaatcctgcttctcttactcctgttattacaaag
tggcataaatttgcttctagtttgacggttgtgctgaacacatttgaggctcaacctttg
aatgatgaagaggataattctattgaccttgatgagggggcatcaaatttcagtataaaa
tatcttactagcagtaagctaatgggcctcgagttgaaggacccaagttttcgtagacat
atcctggttcaatgccttattttgtttgattacctcaaggctcctgggaaaaatgacaaa
gacttaccatctgatgcaatgaaggaagagatgaaaacttgtgaagagcgggtcaagaag
cttctagaaatgacacctcctagaggaaaagatttccttcatagcattgagcatattctt
gaacgggaaaaaaattgggtctggtggaagcgtgatggctgccctccgtttgaaaaacaa
ccgatagaaaaaaagctagctcaagatggaggcaggaagcgtcggcctcggtggagactg
ggaaataaggaactctctcaattgtggaaatgggcagatcaaaatccgaatgctttgaca
gatcctctacgagttcggactcctgacatcatggattactggaaagggttggctgacgat
atggatgaagctgcggggattgaagcagaatatcatcacaaaaataatcgagtctattgc
tggaaaggtttaaggttttcggctcggcaagatttggagggattttctaaattcacagaa
catggcgtggagggtgttgtgcctttggaacttctgacgccagaggtgcggtccaaatat
caagctaaatcaggtgatcgatccaagcgagccaagaaggaagaagcaaaaaactccttg
cagcaaacagagagcactcagattgaaacacacacaagcgagactgatgttgagggaacc
agagacgatcctgaagcctcggtaaccctaatggatgcagatgccaccattgcatcgggg
aacctttcgcagggtgggactccaacgccagatgaaatgcctaagcagaactgggatact
gatggtggtcaggaactaggccagattgaagcagataccgaagttgagatgggaatgatt
gatggtgacatggatgctgaggttgatttagactgtcacggcatgacgagccatgtgtgt
agtcacatttgtttcttctcatga
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