Primulina tabacum: 142553755
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Entry
142553755 CDS
T11246
Name
(RefSeq) uncharacterized protein LOC142553755
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ptab Primulina tabacum
Pathway
ptab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142553755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142553755
03041 Spliceosome [BR:
ptab03041
]
142553755
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
142553755
Spliceosome [BR:
ptab03041
]
Complex B
Other components
Prp19-related factors
142553755
Complex C
142553755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
Mad3_BUB1_I
TPR_19
PPR
PKI
Motif
Other DBs
NCBI-GeneID:
142553755
NCBI-ProteinID:
XP_075520350
LinkDB
All DBs
Position
8:11903646..11908434
Genome browser
AA seq
912 aa
AA seq
DB search
MVISQELYPSEEDYLYEEEVLRNPNNVKLWWRYLIARGEAPFRKRAIIYERALKALPGSY
KLWHAYLRERLELVRNLPISHAQYQTLNNTFERALATMHKMPRIWMMYLQSLTRQKLITK
TRHTFDRALCALPVTQHDRIWEYYLVFVSQKGVPVETSLRVYRRYLKYDPSHIEDFIEFL
VNSELWQEASERLAGVLNDDRFYSLKGKTKHRLWLELCDLLTQHATEVSGLNVDAIIRGG
IKKFTDEVGRLWTSLSDYYIRRGLLEKARDIFEEGMTTVITVRDFSVIFDAYSQFEESML
SIKMENMDLSDDEDDKENENEEKEEEEEDDRLDFEKLKKIIDTFWLKDDKDVDLRLARLE
YLMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTVDPMKAVGKPH
TLWVAFAKLYESHRDVANARVIFDKAVQVNFKAVDHLASVWCEWAEMELRHKNFKGTLDL
MRRATAEPSVEVKRRVAADGNKPVQIILHRSLKLWTFYVDLEESLGSLESTRAVYERILD
LRIATPQIIINYSMLLEDNKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKSK
LERARELFEHAVEMAPAEAVKPLYLQYAKLEEDFGLAKRAMRVYNQATKAVPANEKMGMY
EIYIARAAEIFGIPKTRDIYEQAIESGLPDKDVKVMCLKYAELEKSLGEIDRSRALYKHA
SQFADPRSDPDFWNKWHEFEVQLGNEDTFREMLRVKRSVSASYSQTHFILPEYLMQKDQM
QTLDEAKDVLKKAGVDDDEMAALERQLVPTLNDTKVKDSGRRLGFVSAGMQNEGESLSNR
EDIELPEESDSEDDKVEIAQKDVPTAVFGGLVRRREESEEDVEAPDSTITESKDNDAHLG
ALERIKRMRRGA
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggtgatatcacaggagttgtatccaagtgaagaggactacctgtatgaagaagaagtg
ctccgcaaccctaataacgtcaagctgtggtggcggtatttaattgcccgcggagaagca
cctttccgaaagcgtgccattatttatgagcgtgctctcaaggcattgccaggaagctac
aagctttggcacgcgtacctccgggaacgccttgagctggttaggaatctgcctatcagt
cacgcacagtaccaaaccttgaacaacacgttcgagcgagctctggctacaatgcataag
atgccccgcatttggatgatgtatttgcagtcgttaactcggcagaagttgatcaccaag
acacggcacacctttgatagagctttgtgcgctctcccagttacgcaacatgataggatt
tgggaatattatttagtctttgtttcgcagaagggtgtccctgttgaaacttctctgaga
gtgtacaggaggtacttgaagtatgatccgagtcatattgaggattttattgagtttttg
gttaattcagagttgtggcaggaagcctcggagaggttggcaggggttttgaatgacgat
cggttttactctttaaaagggaagacaaagcacaggctgtggctggaattgtgcgatctg
ttgacacaacatgctactgaggtatcagggttgaatgtggatgcaataattaggggtgga
attaagaagtttacagatgaggttggaagactttggacatcattgtcggattattatatt
aggaggggtttactggaaaaggccagggatatttttgaggaagggatgactacagtgatt
acagtgagagactttagcgttatatttgatgcttattctcagtttgaagagagtatgttg
tccattaagatggaaaatatggatcttagtgatgatgaggatgacaaggagaatgaaaat
gaagagaaggaagaagaagaggaggatgacaggttggattttgagaagttgaagaagata
attgacacattttggttgaaagatgataaggatgtggatttgaggttggcaaggttggag
tatctgatggataggagaccagagttagctaacagtgtgctcttgagacagaatcctcat
aatgtagagcagtggcaccggagagttaagctctttgaagggaaccccacgaagcaaatt
cttacttacacggaggcagtgaggacagtagatccaatgaaggctgttgggaagccacat
actttgtgggttgcatttgctaagttatacgagagccaccgagatgttgctaatgcccgg
gtgatttttgacaaggcagtgcaggtcaattttaaggctgtggaccatctggccagtgtt
tggtgtgaatgggcggagatggagcttaggcacaaaaattttaagggcacactagatttg
atgcgtcgagctaccgcagagccatcagttgaggtcaagagaagagtggctgctgatggc
aacaagccggtgcaaattatacttcacaggtctcttaaactttggacgttctatgtggat
ttggaggaaagcttgggcagcctagagtcaactcgtgcagtttacgaaagaatattggat
ttgagaatagccacaccccaaattattataaattattcaatgctcttagaagataacaag
tactttgaagatgcttttaaggtttatgagagaggtgtgaagatattcaaatacccccat
gtgaaagatatctgggtcacttacctttcaaagttcgtcaagagatatgggaaatcaaaa
ctagaacgagctcgagagttatttgagcatgctgttgaaatggcacctgcagaagcagtg
aaacctctgtatcttcaatatgcaaagctagaagaagactttggtctggctaaaagagca
atgagagtatacaatcaggcaacaaaagctgtccctgctaatgagaaaatgggcatgtat
gaaatatacattgcccgtgctgctgaaatatttggcataccaaaaactagagacatttat
gagcaagcaatagaatctggcctcccagacaaagatgtaaaggttatgtgtttgaagtat
gcagagcttgagaaaagccttggagaaattgaccgcagtcgtgcattatataaacacgct
tcacagtttgccgaccctagatctgaccccgacttctggaataaatggcacgaatttgaa
gtgcagcttgggaatgaagatactttccgagagatgctccgagttaaaagaagtgtttct
gcaagctatagccagacacactttatccttccagagtatttgatgcaaaaggatcagatg
cagacccttgatgaggcaaaggatgtacttaagaaagctggtgtcgatgatgatgaaatg
gctgcccttgaaaggcagttagtccctactctcaatgataccaaagtgaaagatagtggt
agacgattagggtttgtcagcgctgggatgcaaaatgaaggtgagtccctatcaaatagg
gaggatatagagcttccagaagaaagtgattctgaagatgataaggttgagatagcccaa
aaagatgttccaacagccgtatttggaggtctggtgcggagaagggaagaatctgaggaa
gacgtggaagctcctgattcaactattactgaaagcaaagataatgatgcccatcttggt
gctttggagagaataaaaaggatgaggcgaggcgcatag
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